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LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated [ Pan troglodytes (chimpanzee) ]

Gene ID: 742889, updated on 17-Aug-2024

Summary

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Official Symbol
LSM3provided by VGNC
Official Full Name
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associatedprovided by VGNC
Primary source
VGNC:VGNC:7982
Locus tag
CK820_G0008794
See related
Ensembl:ENSPTRG00000014650
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See LSM3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (18181188..18241594)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (18180858..18243463)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 43 Neighboring gene XPC complex subunit, DNA damage recognition and repair factor Neighboring gene uncharacterized LOC104005460 Neighboring gene uncharacterized LOC107970459

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm3
Names
LSM3 homolog, U6 small nuclear RNA associated

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    18181188..18241594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001157526.4 → XP_001157526.1  U6 snRNA-associated Sm-like protein LSm3 isoform X1

    See identical proteins and their annotated locations for XP_001157526.1

    UniProtKB/TrEMBL
    A0A2I3SQM3, A0A2J8NNX5, A0A6D2Y855, H2QM39
    Related
    ENSPTRP00000025273.3
    Conserved Domains (1) summary
    cd01730
    Location:16 → 97
    LSm3; Like-Sm protein 3

  2. XM_016940531.4 → XP_016796020.1  U6 snRNA-associated Sm-like protein LSm3 isoform X2

RNA

  1. XR_010155501.1 RNA Sequence

  2. XR_010155502.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials