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1700017B05Rik RIKEN cDNA 1700017B05 gene [ Mus musculus (house mouse) ]

Gene ID: 74211, updated on 2-Nov-2024

Summary

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Official Symbol
1700017B05Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700017B05 geneprovided by MGI
Primary source
MGI:MGI:1921461
See related
Ensembl:ENSMUSG00000032300 AllianceGenome:MGI:1921461
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D9Ertd278e
Summary
Predicted to be located in cytosol. Orthologous to human C15orf39 (chromosome 15 open reading frame 39). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in testis adult (RPKM 19.1), ovary adult (RPKM 12.0) and 22 other tissues See more
Orthologs
human all
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Genomic context

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See 1700017B05Rik in Genome Data Viewer
Location:
9 B; 9 30.89 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (57159605..57169882, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (57252322..57262599, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_24220 Neighboring gene STARR-positive B cell enhancer ABC_E11407 Neighboring gene predicted gene, 46115 Neighboring gene taste receptor cell gene 1 Neighboring gene STARR-positive B cell enhancer ABC_E890 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:57126080-57126189 Neighboring gene STARR-seq mESC enhancer starr_24223 Neighboring gene STARR-seq mESC enhancer starr_24225 Neighboring gene STARR-seq mESC enhancer starr_24226 Neighboring gene predicted gene, 39343 Neighboring gene STARR-seq mESC enhancer starr_24227 Neighboring gene NSA2 ribosome biogenesis homolog pseudogene Neighboring gene 40S ribosomal protein S8 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Clone Names

  • MGC144191

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
uncharacterized protein C15orf39 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028820.2 → NP_083096.1  uncharacterized protein C15orf39 homolog

    See identical proteins and their annotated locations for NP_083096.1

    Status: VALIDATED

    Source sequence(s)
    AK031730, BC118527, BY706170
    Consensus CDS
    CCDS23219.1
    UniProtKB/Swiss-Prot
    Q148A1, Q3TEI4, Q3TMF2, Q3U253, Q3UM75, Q9DA93
    UniProtKB/TrEMBL
    B9EKK8
    Related
    ENSMUSP00000034846.6, ENSMUST00000034846.7
    Conserved Domains (1) summary
    pfam17663
    Location:1 → 1023
    DUF5525; Family of unknown function (DUF5525)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    57159605..57169882 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511516.4 → XP_006511579.1  uncharacterized protein C15orf39 homolog isoform X1

    See identical proteins and their annotated locations for XP_006511579.1

    UniProtKB/Swiss-Prot
    Q148A1, Q3TEI4, Q3TMF2, Q3U253, Q3UM75, Q9DA93
    UniProtKB/TrEMBL
    B9EKK8
    Conserved Domains (1) summary
    pfam17663
    Location:1 → 1023
    DUF5525; Family of unknown function (DUF5525)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3TEI4.2 GenPept UniProtKB/Swiss-Prot:Q3TEI4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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