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GNPDA2 glucosamine-6-phosphate deaminase 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 740946, updated on 10-Oct-2024

Summary

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Official Symbol
GNPDA2provided by VGNC
Official Full Name
glucosamine-6-phosphate deaminase 2provided by VGNC
Primary source
VGNC:VGNC:2018
Locus tag
CK820_G0003664
See related
Ensembl:ENSPTRG00000016023
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See GNPDA2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (44956590..45001127, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (44956563..45001005, complement)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107974077 Neighboring gene uncharacterized LOC129143716 Neighboring gene Yip1 domain family member 7 Neighboring gene uncharacterized LOC107974247 Neighboring gene GTP binding elongation factor GUF1 Neighboring gene WD repeat and FYVE domain containing 3 Neighboring gene U6 spliceosomal RNA Neighboring gene CDP-diacylglycerol synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 2
XP_001143245.2
XP_009445872.1
XP_016806977.1
XP_016806978.1
XP_016806979.1
XP_016806980.1
XP_063665557.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    44956590..45001127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016951490.3 → XP_016806979.1  glucosamine-6-phosphate isomerase 2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8PGF6

  2. XM_009447597.5 → XP_009445872.1  glucosamine-6-phosphate isomerase 2 isoform X7

    UniProtKB/TrEMBL
    A0A2J8PGF6
    Conserved Domains (1) summary
    cl00339
    Location:1 → 253
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

  3. XM_016951488.3 → XP_016806977.1  glucosamine-6-phosphate isomerase 2 isoform X3

    UniProtKB/TrEMBL
    A0A2J8PGF6
    Related
    ENSPTRP00000088153.1

  4. XM_001143245.8 → XP_001143245.2  glucosamine-6-phosphate isomerase 2 isoform X1

    See identical proteins and their annotated locations for XP_001143245.2

    UniProtKB/TrEMBL
    A0A2J8PGF6, A0A2J8PGG6, A0A6D2WMX4, H2QPE3
    Related
    ENSPTRP00000027571.3
    Conserved Domains (1) summary
    cl00339
    Location:1 → 253
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

  5. XM_016951491.4 → XP_016806980.1  glucosamine-6-phosphate isomerase 2 isoform X5

    UniProtKB/TrEMBL
    A0A2I3TUN8, A0A2J8PGF6, A0A2J8PGG3, A0A6D2Y946
    Related
    ENSPTRP00000092941.1
    Conserved Domains (1) summary
    cl00339
    Location:1 → 219
    SugarP_isomerase; SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ...

  6. XM_016951489.4 → XP_016806978.1  glucosamine-6-phosphate isomerase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8PGF6, A0A2J8PGG2
    Conserved Domains (1) summary
    cl00339
    Location:1 → 253
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

  7. XM_063809487.1 → XP_063665557.1  glucosamine-6-phosphate isomerase 2 isoform X6

RNA

  1. XR_001716866.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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