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TTC21B tetratricopeptide repeat domain 21B [ Pan troglodytes (chimpanzee) ]

Gene ID: 740725, updated on 10-Oct-2024

Summary

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Official Symbol
TTC21Bprovided by VGNC
Official Full Name
tetratricopeptide repeat domain 21Bprovided by VGNC
Primary source
VGNC:VGNC:2896
Locus tag
CK820_G0001399
See related
Ensembl:ENSPTRG00000012594
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TTC21B in Genome Data Viewer
Location:
chromosome: 13
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (67876556..67973262, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (67876516..67973222, complement)

Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene cysteine and serine rich nuclear protein 3 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 3 Neighboring gene uncharacterized LOC134807986 Neighboring gene uncharacterized LOC107973643 Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene uncharacterized LOC104005249 Neighboring gene sodium voltage-gated channel alpha subunit 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary retrograde transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of intraciliary transport particle A IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 21B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    67876556..67973262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016949451.4 → XP_016804940.1  tetratricopeptide repeat protein 21B isoform X1

    UniProtKB/TrEMBL
    A0A2J8PQC0, A0A6D2XZM5, H2QIX1, K7A343
    Conserved Domains (2) summary
    sd00006
    Location:722 → 750
    TPR; TPR repeat [structural motif]
    cl26002
    Location:313 → 985
    TPR_11; TPR repeat

  2. XM_063790536.1 → XP_063646606.1  tetratricopeptide repeat protein 21B isoform X3

  3. XM_063790535.1 → XP_063646605.1  tetratricopeptide repeat protein 21B isoform X3

  4. XM_009443627.5 → XP_009441902.1  tetratricopeptide repeat protein 21B isoform X2

    UniProtKB/TrEMBL
    K7A343
    Conserved Domains (3) summary
    sd00006
    Location:722 → 750
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:721 → 784
    TPR_11; TPR repeat
    pfam14559
    Location:895 → 961
    TPR_19; Tetratricopeptide repeat

RNA

  1. XR_010149773.1 RNA Sequence

  2. XR_010149774.1 RNA Sequence

  3. XR_010149772.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials