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POLR2L RNA polymerase II, I and III subunit L [ Pan troglodytes (chimpanzee) ]

Gene ID: 740555, updated on 17-Aug-2024

Summary

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Official Symbol
POLR2Lprovided by VGNC
Official Full Name
RNA polymerase II, I and III subunit Lprovided by VGNC
Primary source
VGNC:VGNC:48948
Locus tag
CK820_G0044135
See related
Ensembl:ENSPTRG00000052712
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See POLR2L in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (5073141..5075510, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (4991736..4994105, complement)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene calcium release activated channel regulator 2B Neighboring gene CD151 molecule Neighboring gene tetraspanin 4 Neighboring gene uncharacterized LOC134807320 Neighboring gene chitinase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase I activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase III activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases I, II, and III subunit RPABC5
Names
DNA directed RNA polymerase II polypeptide L
RNA polymerase II subunit L
polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa
polymerase (RNA) II subunit L
XP_009457936.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    5073141..5075510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009459661.3 → XP_009457936.1  DNA-directed RNA polymerases I, II, and III subunit RPABC5

    See identical proteins and their annotated locations for XP_009457936.1

    UniProtKB/TrEMBL
    A0A2I3RW69, A0A2J8JVI9, A0A6D2VX55
    Related
    ENSPTRP00000068944.1
    Conserved Domains (1) summary
    pfam01194
    Location:1 → 59
    RNA_pol_N; RNA polymerases N / 8 kDa subunit
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials