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4930438A08Rik RIKEN cDNA 4930438A08 gene [ Mus musculus (house mouse) ]

Gene ID: 73988, updated on 2-Nov-2024

Summary

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Official Symbol
4930438A08Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930438A08 geneprovided by MGI
Primary source
MGI:MGI:1921238
See related
Ensembl:ENSMUSG00000069873 AllianceGenome:MGI:1921238
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable L-amino-acid oxidase activity and polyamine oxidase activity. Predicted to be involved in amino acid catabolic process. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in liver E18 (RPKM 2.1), stomach adult (RPKM 1.5) and 8 other tissues See more
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Genomic context

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See 4930438A08Rik in Genome Data Viewer
Location:
11 B1.3; 11 36.19 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (58165654..58185116)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (58274828..58294290)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8408 Neighboring gene immunity-related GTPase family M member 2 Neighboring gene predicted gene, 51898 Neighboring gene STARR-seq mESC enhancer starr_29602 Neighboring gene piggyBac transposable element derived 2 (Pgbd2) pseudogene Neighboring gene predicted gene, 39827 Neighboring gene predicted gene, 53708 Neighboring gene nuclear encoded tRNA glutamic acid 10 (anticodon CTC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables L-amino-acid oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables polyamine oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in amino acid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC73988

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374705.1 → NP_001361634.1  uncharacterized protein LOC73988 precursor

    Status: VALIDATED

    Source sequence(s)
    AL928857
    Consensus CDS
    CCDS88160.1
    UniProtKB/TrEMBL
    Q5SPH3
    Related
    ENSMUSP00000104462.3, ENSMUST00000108834.3
    Conserved Domains (2) summary
    PRK12779
    Location:42 → 98
    PRK12779; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
    pfam01593
    Location:71 → 512
    Amino_oxidase; Flavin containing amine oxidoreductase

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    58165654..58185116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017314866.3 → XP_017170355.1  uncharacterized protein LOC73988 isoform X1

    UniProtKB/TrEMBL
    Q9CUM6
    Conserved Domains (1) summary
    COG1231
    Location:17 → 283
    YobN; Monoamine oxidase [Amino acid transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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