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CPEB3 cytoplasmic polyadenylation element binding protein 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 739487, updated on 10-Oct-2024

Summary

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Official Symbol
CPEB3provided by VGNC
Official Full Name
cytoplasmic polyadenylation element binding protein 3provided by VGNC
Primary source
VGNC:VGNC:12286
Locus tag
CK820_G0004306
See related
Ensembl:ENSPTRG00000002753
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CPEB3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 8 NC_072406.2 (104289797..104532561, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 10 NC_072408.1 (94905802..95149821, complement)

Chromosome 8 - NC_072406.2Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene B-TFIID TATA-box binding protein associated factor 1 Neighboring gene eukaryotic initiation factor 4A-I-like Neighboring gene succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like Neighboring gene NHP2 ribonucleoprotein pseudogene Neighboring gene membrane associated ring-CH-type finger 5 Neighboring gene uncharacterized LOC134807197

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation factor activity, RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072406.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    104289797..104532561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016918864.4 → XP_016774353.1  cytoplasmic polyadenylation element-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A2I3TCR3, A0A2J8PE85
    Conserved Domains (3) summary
    pfam16366
    Location:611 → 672
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:428 → 519
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:536 → 616
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  2. XM_016918862.4 → XP_016774351.1  cytoplasmic polyadenylation element-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A2J8PE84, A0A6D2WHA2, H2Q298
    Related
    ENSPTRP00000004807.5

  3. XM_016918865.4 → XP_016774354.1  cytoplasmic polyadenylation element-binding protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A2J8PE84, A0A6D2WHA2, H2Q298

  4. XM_016918863.4 → XP_016774352.1  cytoplasmic polyadenylation element-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A2I3TCR3
    Conserved Domains (3) summary
    pfam16366
    Location:619 → 680
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:436 → 527
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:544 → 624
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  5. XM_016918857.4 → XP_016774346.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SRF4, A0A2J8PE84, A0A6D2WHA2, H2Q298

  6. XM_063781984.1 → XP_063638054.1  cytoplasmic polyadenylation element-binding protein 3 isoform X3

  7. XM_054660352.2 → XP_054516327.1  cytoplasmic polyadenylation element-binding protein 3 isoform X2

  8. XM_016918860.4 → XP_016774349.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SRF4, A0A2J8PE84, A0A6D2WHA2, H2Q298

  9. XM_063781982.1 → XP_063638052.1  cytoplasmic polyadenylation element-binding protein 3 isoform X2

  10. XM_063781986.1 → XP_063638056.1  cytoplasmic polyadenylation element-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A2J8PE85

  11. XM_063781981.1 → XP_063638051.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SRF4

  12. XM_054660353.2 → XP_054516328.1  cytoplasmic polyadenylation element-binding protein 3 isoform X3

  13. XM_016918861.4 → XP_016774350.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SRF4, A0A2J8PE84, A0A6D2WHA2, H2Q298

  14. XM_054660351.2 → XP_054516326.1  cytoplasmic polyadenylation element-binding protein 3 isoform X2

  15. XM_016918858.4 → XP_016774347.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SRF4, A0A2J8PE84, A0A6D2WHA2, H2Q298
    Related
    ENSPTRP00000079507.1

  16. XM_063781985.1 → XP_063638055.1  cytoplasmic polyadenylation element-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A2J8PE85

  17. XM_054660355.2 → XP_054516330.1  cytoplasmic polyadenylation element-binding protein 3 isoform X8

  18. XM_054660354.2 → XP_054516329.1  cytoplasmic polyadenylation element-binding protein 3 isoform X7

  19. XM_016918867.3 → XP_016774356.1  cytoplasmic polyadenylation element-binding protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A2J8PE84, A0A6D2WHA2, H2Q298
Nucleotide Protein
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