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Ccdc175 coiled-coil domain containing 175 [ Mus musculus (house mouse) ]

Gene ID: 73936, updated on 2-Nov-2024

Summary

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Official Symbol
Ccdc175provided by MGI
Official Full Name
coiled-coil domain containing 175provided by MGI
Primary source
MGI:MGI:1921186
See related
Ensembl:ENSMUSG00000021086 AllianceGenome:MGI:1921186
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930403N07Rik
Summary
Orthologous to human CCDC175 (coiled-coil domain containing 175). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 4.4), CNS E18 (RPKM 0.4) and 7 other tissues See more
Orthologs
human all
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Genomic context

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See Ccdc175 in Genome Data Viewer
Location:
12 C3; 12 30.2 cM
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (72148066..72231803, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (72101292..72185029, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_32433 Neighboring gene STARR-positive B cell enhancer ABC_E3055 Neighboring gene L-3-hydroxyproline dehydratase (trans-) Neighboring gene predicted gene 3225 Neighboring gene JNK1/MAPK8-associated membrane protein Neighboring gene predicted gene, 19135 Neighboring gene STARR-seq mESC enhancer starr_32435 Neighboring gene zinc finger protein 146 pseudogene Neighboring gene STARR-seq mESC enhancer starr_32436 Neighboring gene reticulon 1 Neighboring gene predicted gene, 52013 Neighboring gene STARR-seq mESC enhancer starr_32439 Neighboring gene predicted gene, 33487

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Interactome of vertebrate GAF/ThPOK reveals its diverse functions in gene regulation and DNA repair. Srivastava A, et al. J Biosci, 2020. PMID 32098917
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 175

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028687.1 → NP_082963.1  coiled-coil domain-containing protein 175

    See identical proteins and their annotated locations for NP_082963.1

    Status: VALIDATED

    Source sequence(s)
    AC110170, CR974486
    Consensus CDS
    CCDS49084.1
    UniProtKB/Swiss-Prot
    E9PVB3
    Related
    ENSMUSP00000021494.5, ENSMUST00000021494.6
    Conserved Domains (2) summary
    COG1196
    Location:251 → 600
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR04523
    Location:72 → 385
    Mplasa_alph_rch; helix-rich Mycoplasma protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    72148066..72231803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315215.3 → XP_017170704.1  coiled-coil domain-containing protein 175 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:46 → 786
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR04523
    Location:72 → 385
    Mplasa_alph_rch; helix-rich Mycoplasma protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E9PVB3.1 GenPept UniProtKB/Swiss-Prot:E9PVB3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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