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4930423M02Rik RIKEN cDNA 4930423M02 gene [ Mus musculus (house mouse) ]

Gene ID: 73872, updated on 17-Aug-2024

Summary

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Official Symbol
4930423M02Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930423M02 geneprovided by MGI
Primary source
MGI:MGI:1921122
See related
Ensembl:ENSMUSG00000086066 AllianceGenome:MGI:1921122
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 2.2) See more
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Genomic context

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See 4930423M02Rik in Genome Data Viewer
Location:
4 A1; 4 2.62 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (5632328..5642284)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (5632328..5642284)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10225 Neighboring gene STARR-seq mESC enhancer starr_09450 Neighboring gene 3'(2'), 5'-bisphosphate nucleotidase 2 Neighboring gene STARR-seq mESC enhancer starr_09451 Neighboring gene STARR-seq mESC enhancer starr_09452 Neighboring gene STARR-seq mESC enhancer starr_09453 Neighboring gene STARR-seq mESC enhancer starr_09455 Neighboring gene family with sequence similarity 20, member B pseudogene Neighboring gene STARR-seq mESC enhancer starr_09456 Neighboring gene STARR-seq mESC enhancer starr_09457 Neighboring gene STARR-seq mESC enhancer starr_09458 Neighboring gene STARR-seq mESC enhancer starr_09459 Neighboring gene STARR-seq mESC enhancer starr_09460 Neighboring gene STARR-seq mESC enhancer starr_09461 Neighboring gene STARR-seq mESC enhancer starr_09463 Neighboring gene STARR-seq mESC enhancer starr_09464 Neighboring gene STARR-seq mESC enhancer starr_09467 Neighboring gene STARR-seq mESC enhancer starr_09468 Neighboring gene family with sequence similarity 110, member B Neighboring gene STARR-seq mESC enhancer starr_09469 Neighboring gene predicted gene, 24337 Neighboring gene VISTA enhancer mm718 Neighboring gene STARR-seq mESC enhancer starr_09473 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038183.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK015191, AL772304
    Related
    ENSMUST00000156903.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    5632328..5642284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.