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Pabir3 PABIR family member 3 [ Mus musculus (house mouse) ]

Gene ID: 73866, updated on 2-Nov-2024

Summary

Official Symbol
Pabir3provided by MGI
Official Full Name
PABIR family member 3provided by MGI
Primary source
MGI:MGI:1921116
See related
Ensembl:ENSMUSG00000036013 AllianceGenome:MGI:1921116
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam122c; 4930432H15Rik; 4930527G05Rik
Summary
Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in mitotic G2/M transition checkpoint. Predicted to be active in cytoplasm and nucleus. Orthologous to human PABIR3 (PABIR family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 12.2) See more
Orthologs
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Genomic context

See Pabir3 in Genome Data Viewer
Location:
X A5; X 29.45 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52362296..52420063)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53273419..53331186)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 35988 Neighboring gene placental specific protein 1 Neighboring gene PABIR family member 2 Neighboring gene ribosomal protein L13 pseudogene Neighboring gene motile sperm domain containing 1 Neighboring gene casein kinase 1, gamma 3 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein serine/threonine phosphatase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in mitotic G2/M transition checkpoint IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
protein FAM122C
Names
family with sequence similarity 122, member C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028671.3NP_082947.1  protein FAM122C

    See identical proteins and their annotated locations for NP_082947.1

    Status: VALIDATED

    Source sequence(s)
    AK015288, AK015916
    Consensus CDS
    CCDS40973.1
    UniProtKB/TrEMBL
    Q9D514, Q9D5J5
    Related
    ENSMUSP00000110484.2, ENSMUST00000114835.8

RNA

  1. NR_153099.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC147640, BX679674
  2. NR_153100.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK015288, BX679674

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    52362296..52420063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006541549.5XP_006541612.1  protein FAM122C isoform X1

    See identical proteins and their annotated locations for XP_006541612.1

    UniProtKB/TrEMBL
    Q9D514, Q9D5J5
  2. XM_006541548.1XP_006541611.1  protein FAM122C isoform X1

    See identical proteins and their annotated locations for XP_006541611.1

    UniProtKB/TrEMBL
    Q9D514, Q9D5J5
    Related
    ENSMUSP00000127499.2, ENSMUST00000124137.8