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Ifitm5 interferon induced transmembrane protein 5 [ Mus musculus (house mouse) ]

Gene ID: 73835, updated on 2-Nov-2024

Summary

Official Symbol
Ifitm5provided by MGI
Official Full Name
interferon induced transmembrane protein 5provided by MGI
Primary source
MGI:MGI:1934923
See related
Ensembl:ENSMUSG00000025489 AllianceGenome:MGI:1934923
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Bril; DSPA1; Hrmp1; Hrtm1; 1110003J06Rik
Summary
Involved in bone mineralization; bone morphogenesis; and in utero embryonic development. Located in plasma membrane. Is expressed in several structures, including bone; genitourinary system; limb cartilage condensation; perichondrium; and spleen. Used to study osteogenesis imperfecta type 5. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 5. Orthologous to human IFITM5 (interferon induced transmembrane protein 5). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in limb E14.5 (RPKM 9.7), lung adult (RPKM 2.0) and 15 other tissues See more
Orthologs
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Genomic context

See Ifitm5 in Genome Data Viewer
Location:
7 F5; 7 86.17 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (140528871..140530156, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (140948958..140950243, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene NLR family, pyrin domain containing 6 Neighboring gene STARR-positive B cell enhancer ABC_E2853 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:148127673-148127984 Neighboring gene protein glucosylgalactosylhydroxylysine glucosidase Neighboring gene STARR-seq mESC enhancer starr_20461 Neighboring gene interferon induced transmembrane protein 2 Neighboring gene STARR-seq mESC enhancer starr_20462 Neighboring gene interferon induced transmembrane protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Clone Names

  • MGC118415

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in bone mineralization IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within bone mineralization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in bone mineralization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in bone mineralization ISO
Inferred from Sequence Orthology
more info
 
involved_in bone morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in bone morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in bone morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in in utero embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within multicellular organism development TAS
Traceable Author Statement
more info
PubMed 
involved_in regulation of bone mineralization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane TAS
Traceable Author Statement
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
interferon-induced transmembrane protein 5
Names
bone-restricted interferon induced transmembrane protein-like protein
dispanin subfamily A member 1
fragilis family member 4
haemopoiesis related membrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053088.3NP_444318.1  interferon-induced transmembrane protein 5

    See identical proteins and their annotated locations for NP_444318.1

    Status: VALIDATED

    Source sequence(s)
    BC103790, BY703620, FJ200451
    Consensus CDS
    CCDS21993.1
    UniProtKB/Swiss-Prot
    O88728
    Related
    ENSMUSP00000026562.5, ENSMUST00000026562.6
    Conserved Domains (1) summary
    pfam04505
    Location:2894
    CD225; Interferon-induced transmembrane protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    140528871..140530156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)