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SLC66A2 solute carrier family 66 member 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 738022, updated on 10-Oct-2024

Summary

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Official Symbol
SLC66A2provided by VGNC
Official Full Name
solute carrier family 66 member 2provided by VGNC
Primary source
VGNC:VGNC:5196
Locus tag
CK820_G0049716
See related
Ensembl:ENSPTRG00000010135
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
PQLC1
Orthologs
human mouse all
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Genomic context

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See SLC66A2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 17 NC_072415.2 (90022412..90069993, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 18 NC_072416.1 (88953721..89001258, complement)

Chromosome 17 - NC_072415.2Genomic Context describing neighboring genes Neighboring gene CTD phosphatase subunit 1 Neighboring gene potassium voltage-gated channel modifier subfamily G member 2 Neighboring gene uncharacterized LOC107969546 Neighboring gene heat shock factor binding protein 1 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PQ-loop repeat-containing protein 1; solute carrier family 66 member 2
Names
PQ loop repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072415.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    90022412..90069993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054671884.2 → XP_054527859.1  solute carrier family 66 member 2 isoform X3

    UniProtKB/TrEMBL
    A0A2J8J919, A0A5S6RD34, K7DNT0

  2. XM_054671883.2 → XP_054527858.1  solute carrier family 66 member 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8J915, A0A5S6R8G4, K7BSK8

  3. XM_054671882.2 → XP_054527857.1  solute carrier family 66 member 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8J915, A0A5S6R8G4, K7BSK8

  4. XM_054671880.1 → XP_054527855.1  solute carrier family 66 member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8J8Y8, A0A5S6RDJ0, H2QER2

  5. XM_054671881.2 → XP_054527856.1  solute carrier family 66 member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8J8Y8, A0A5S6RDJ0, H2QER2

  6. XM_063795886.1 → XP_063651956.1  solute carrier family 66 member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8J8Y8, A0A5S6RDJ0, H2QER2

  7. XM_003315961.5 → XP_003316009.1  solute carrier family 66 member 2 isoform X3

    See identical proteins and their annotated locations for XP_003316009.1

    UniProtKB/TrEMBL
    A0A2J8J917, A0A2J8J919, A0A5S6RD34, K7DNT0
    Conserved Domains (1) summary
    pfam04193
    Location:18 → 76
    PQ-loop; PQ loop repeat

  8. XM_001144914.6 → XP_001144914.1  solute carrier family 66 member 2 isoform X2

    See identical proteins and their annotated locations for XP_001144914.1

    UniProtKB/TrEMBL
    A0A2J8J915, A0A5S6R8G4, K7BSK8
    Conserved Domains (1) summary
    pfam04193
    Location:154 → 211
    PQ-loop; PQ loop repeat

  9. XM_001144990.6 → XP_001144990.1  solute carrier family 66 member 2 isoform X1

    See identical proteins and their annotated locations for XP_001144990.1

    UniProtKB/TrEMBL
    A0A2J8J8Y8, A0A5S6RDJ0, H2QER2
    Conserved Domains (1) summary
    pfam04193
    Location:172 → 229
    PQ-loop; PQ loop repeat

RNA

  1. XR_008540694.1 RNA Sequence

  2. XR_010152007.1 RNA Sequence

  3. XR_008540693.2 RNA Sequence

  4. XR_008540692.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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