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PTP4A3 protein tyrosine phosphatase 4A3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 737820, updated on 17-Aug-2024

Summary

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Official Symbol
PTP4A3provided by VGNC
Official Full Name
protein tyrosine phosphatase 4A3provided by VGNC
Primary source
VGNC:VGNC:50317
Locus tag
CK820_G0029186
See related
Ensembl:ENSPTRG00000020631
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PTP4A3 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 7 NC_072405.2 (151667347..151714360)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 8 NC_072406.1 (156267920..156314955)

Chromosome 7 - NC_072405.2Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 20 Neighboring gene uncharacterized LOC104007779 Neighboring gene maestro heat-like repeat family member 5 Neighboring gene small nucleolar RNA SNORD5 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endothelial cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein tyrosine phosphatase type IVA 3
Names
protein tyrosine phosphatase type IVA, member 3
XP_009454315.1
XP_016815436.1
XP_016815442.1
XP_054513013.2
XP_063673474.1
XP_063673475.1
XP_063673476.1
XP_063673477.1
XP_063673478.1
XP_063673479.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072405.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    151667347..151714360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063817404.1 → XP_063673474.1  protein tyrosine phosphatase type IVA 3 isoform X1

  2. XM_063817409.1 → XP_063673479.1  protein tyrosine phosphatase type IVA 3 isoform X4

    UniProtKB/TrEMBL
    A0A2J8LFH9, A0A6D2X0S4, K7ARF1

  3. XM_016959953.3 → XP_016815442.1  protein tyrosine phosphatase type IVA 3 isoform X2

    UniProtKB/TrEMBL
    A0A2I3REL6, A0A2J8LFH1, A0A6D2WDU7, H2QWS4
    Conserved Domains (1) summary
    cd18535
    Location:5 → 158
    PTP-IVa3; protein tyrosine phosphatase type IVA 3

  4. XM_054657038.2 → XP_054513013.2  protein tyrosine phosphatase type IVA 3 isoform X1

  5. XM_063817407.1 → XP_063673477.1  protein tyrosine phosphatase type IVA 3 isoform X1

  6. XM_009456040.5 → XP_009454315.1  protein tyrosine phosphatase type IVA 3 isoform X3

    See identical proteins and their annotated locations for XP_009454315.1

    UniProtKB/TrEMBL
    A0A2J8LFH5
    Conserved Domains (1) summary
    cl28904
    Location:10 → 134
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  7. XM_063817408.1 → XP_063673478.1  protein tyrosine phosphatase type IVA 3 isoform X4

    UniProtKB/TrEMBL
    A0A2J8LFH9, A0A6D2X0S4, K7ARF1

  8. XM_016959947.4 → XP_016815436.1  protein tyrosine phosphatase type IVA 3 isoform X2

    UniProtKB/TrEMBL
    A0A2I3REL6, A0A2J8LFH1, A0A6D2WDU7, H2QWS4
    Conserved Domains (1) summary
    cd18535
    Location:5 → 158
    PTP-IVa3; protein tyrosine phosphatase type IVA 3

  9. XM_063817405.1 → XP_063673475.1  protein tyrosine phosphatase type IVA 3 isoform X1

  10. XM_063817406.1 → XP_063673476.1  protein tyrosine phosphatase type IVA 3 isoform X1

Nucleotide Protein
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