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CA5B carbonic anhydrase 5B [ Pan troglodytes (chimpanzee) ]

Gene ID: 737324, updated on 10-Oct-2024

Summary

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Official Symbol
CA5Bprovided by VGNC
Official Full Name
carbonic anhydrase 5Bprovided by VGNC
Primary source
VGNC:VGNC:10174
Locus tag
CK820_G0035750
See related
Ensembl:ENSPTRG00000043027
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CA5B in Genome Data Viewer
Location:
chromosome: X
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) X NC_072421.2 (16268404..16375795)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) X NC_072421.1 (16282649..16371927)

Chromosome X - NC_072421.2Genomic Context describing neighboring genes Neighboring gene angiotensin converting enzyme 2 Neighboring gene prothymosin alpha-like Neighboring gene collectrin, amino acid transport regulator Neighboring gene small nucleolar RNA SNORA7 Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene adaptor related protein complex 1 subunit sigma 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbonic anhydrase 5B, mitochondrial
Names
carbonic anhydrase VB, mitochondrial
XP_001139130.1
XP_009437078.1
XP_016798470.1
XP_063660905.1
XP_063660906.1
XP_063660907.1
XP_063660908.1
XP_063660909.1
XP_063660910.1
XP_063660911.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072421.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    16268404..16375795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063804835.1 → XP_063660905.1  carbonic anhydrase 5B, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A2J8KU78, A0A6D2W3S0, H2R4T4

  2. XM_063804839.1 → XP_063660909.1  carbonic anhydrase 5B, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A2J8KU78, A0A6D2W3S0, H2R4T4

  3. XM_063804838.1 → XP_063660908.1  carbonic anhydrase 5B, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A2J8KU78, A0A6D2W3S0, H2R4T4

  4. XM_063804836.1 → XP_063660906.1  carbonic anhydrase 5B, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A2J8KU78, A0A6D2W3S0, H2R4T4

  5. XM_063804841.1 → XP_063660911.1  carbonic anhydrase 5B, mitochondrial isoform X2

  6. XM_063804837.1 → XP_063660907.1  carbonic anhydrase 5B, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A2J8KU78, A0A6D2W3S0, H2R4T4

  7. XM_063804840.1 → XP_063660910.1  carbonic anhydrase 5B, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A2J8KU78, A0A6D2W3S0, H2R4T4

  8. XM_009438803.5 → XP_009437078.1  carbonic anhydrase 5B, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_009437078.1

    UniProtKB/TrEMBL
    A0A2J8KU78, A0A6D2W3S0, H2R4T4, K7B8W8
    Related
    ENSPTRP00000047488.2
    Conserved Domains (1) summary
    cl00012
    Location:61 → 296
    alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...

  9. XM_001139130.7 → XP_001139130.1  carbonic anhydrase 5B, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_001139130.1

    UniProtKB/TrEMBL
    A0A2J8KU78, A0A6D2W3S0, H2R4T4, K7B8W8
    Related
    ENSPTRP00000092331.1
    Conserved Domains (1) summary
    cl00012
    Location:61 → 296
    alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...

  10. XM_016942981.4 → XP_016798470.1  carbonic anhydrase 5B, mitochondrial isoform X3

    UniProtKB/TrEMBL
    K7B8W8
    Conserved Domains (1) summary
    cl00012
    Location:22 → 257
    alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...

RNA

  1. XR_008541952.2 RNA Sequence

Nucleotide Protein
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