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CG42354 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 7354437, updated on 28-Oct-2024

Summary

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Official Symbol
CG42354provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0259700
Locus tag
Dmel_CG42354
See related
AllianceGenome:FB:FBgn0259700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG9216; Dmel\CG42354
Old locus tag
Dmel_CG9216
Summary
Is expressed in adult head. [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See CG42354 in Genome Data Viewer
Location:
14A9-14A9; 1-52 cM
Exon count:
8
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (16093059..16104946, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (15987092..15998979, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene mir-4958 stem loop Neighboring gene Transducer of ERBB2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene disco-related Neighboring gene long non-coding RNA:CR46211 Neighboring gene mir-985 stem loop

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gain-of-function screen identifies a role of the Sec61alpha translocon in Drosophila postmitotic neurotoxicity. Kanuka H, et al. Biochim Biophys Acta, 2005 Nov 30. PMID 16243437
  2. The Drosophila Post-mating Response: Gene Expression and Behavioral Changes Reveal Perdurance and Variation in Cross-Tissue Interactions. Newell NR, et al. G3 (Bethesda), 2020 Mar 5. PMID 31907222, Free PMC Article
  3. New components of Drosophila leg development identified through genome wide association studies. Grubbs N, et al. PLoS One, 2013. PMID 23560084, Free PMC Article
  4. The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. Bellen HJ, et al. Genetics, 2004 Jun. PMID 15238527, Free PMC Article
  5. Conservation of caspase substrates across metazoans suggests hierarchical importance of signaling pathways over specific targets and cleavage site motifs in apoptosis. Crawford ED, et al. Cell Death Differ, 2012 Dec. PMID 22918439, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG42354-PA
CG42354-PB
CG42354-PC
CG42354-PD
CG42354-PE
CG42354-PF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    16093059..16104946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001144729.3 → NP_001138201.1  uncharacterized protein Dmel_CG42354, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001138201.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IR21
    Conserved Domains (1) summary
    TIGR01642
    Location:374 → 487
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  2. NM_001144730.3 → NP_001138202.1  uncharacterized protein Dmel_CG42354, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001138202.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IR21
    Conserved Domains (1) summary
    TIGR01642
    Location:374 → 487
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  3. NM_167486.3 → NP_727937.1  uncharacterized protein Dmel_CG42354, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_727937.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IR21
    Conserved Domains (1) summary
    TIGR01642
    Location:374 → 487
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  4. NM_001272668.2 → NP_001259597.1  uncharacterized protein Dmel_CG42354, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259597.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PHV4
    Conserved Domains (1) summary
    TIGR01642
    Location:375 → 488
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  5. NM_001272666.1 → NP_001259595.1  uncharacterized protein Dmel_CG42354, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259595.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IR21
    Conserved Domains (1) summary
    TIGR01642
    Location:374 → 487
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  6. NM_001272667.1 → NP_001259596.1  uncharacterized protein Dmel_CG42354, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259596.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IR21
    Conserved Domains (1) summary
    TIGR01642
    Location:374 → 487
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PHV4 M9PHV4
Q8IR21 Q8IR21

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