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CG42372 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 7354379, updated on 18-Sep-2024

Summary

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Official Symbol
CG42372provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0259718
Locus tag
Dmel_CG42372
See related
AllianceGenome:FB:FBgn0259718
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG42372; Dromel_CG30100_FBtr0087140_uORF
Orthologs
all
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Genomic context

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See CG42372 in Genome Data Viewer
Location:
53B1-53B1; 2-79 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (16291453..16292269)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (12178958..12179774)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR43730 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Juvenile hormone-inducible protein 26 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Autophagy-related 9 Neighboring gene long non-coding RNA:CR45232

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. orsai, the Drosophila homolog of human ETFRF1, links lipid catabolism to growth control. Fernandez-Acosta M, et al. BMC Biol, 2022 Oct 21. PMID 36266680, Free PMC Article
  2. Exhaustive identification of conserved upstream open reading frames with potential translational regulatory functions from animal genomes. Takahashi H, et al. Sci Rep, 2020 Oct 1. PMID 33004976, Free PMC Article
  3. Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species. Hayden CA, et al. BMC Genomics, 2008 Feb 1. PMID 18237443, Free PMC Article
  4. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs. Li H, et al. DNA Res, 2016 Dec. PMID 27559081, Free PMC Article
  5. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG42372-PA
CG42372-PC
CPuORF of FBgn0050100

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    16291453..16292269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001144205.2 → NP_001137677.1  uncharacterized protein Dmel_CG42372, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137677.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7YZH8, B7YZH9
    Conserved Domains (1) summary
    pfam05347
    Location:7 → 63
    Complex1_LYR; Complex 1 protein (LYR family)

  2. NM_001144206.2 → NP_001137678.2  uncharacterized protein Dmel_CG42372, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137678.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7YZH8, B7YZH9
    Conserved Domains (1) summary
    pfam05347
    Location:7 → 63
    Complex1_LYR; Complex 1 protein (LYR family)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B7YZH8 B7YZH8

Gene LinkOut

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