U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 735328, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SPTLC3provided by VGNC
Official Full Name
serine palmitoyltransferase long chain base subunit 3provided by VGNC
Primary source
VGNC:VGNC:10000
Locus tag
CK820_G0017630
See related
Ensembl:ENSPTRG00000013255
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
SPTLC2L
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SPTLC3 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (19524341..19683453)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (19535636..19694748)

Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107969950 Neighboring gene uncharacterized LOC107969949 Neighboring gene taspase 1 Neighboring gene isthmin 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
serine palmitoyltransferase 3
Names
serine palmitoyltransferase, long chain base subunit 2-like (aminotransferase 2)
XP_001135152.1
XP_009435090.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    19524341..19683453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009436815.4 → XP_009435090.1  serine palmitoyltransferase 3

    See identical proteins and their annotated locations for XP_009435090.1

    UniProtKB/TrEMBL
    A0A2J8MSV2, A0A6D2W111, H2RCY8
    Conserved Domains (1) summary
    PLN02483
    Location:57 → 549
    PLN02483; serine palmitoyltransferase

  2. XM_001135152.5 → XP_001135152.1  serine palmitoyltransferase 3

    See identical proteins and their annotated locations for XP_001135152.1

    UniProtKB/TrEMBL
    A0A2J8MSV2, A0A6D2W111, H2RCY8
    Related
    ENSPTRP00000058039.1
    Conserved Domains (1) summary
    PLN02483
    Location:57 → 549
    PLN02483; serine palmitoyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials