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supt20h.S SPT20 homolog, SAGA complex component S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735244, updated on 4-Nov-2024

Summary

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Official Symbol
supt20h.S
Official Full Name
SPT20 homolog, SAGA complex component S homeolog
Primary source
Xenbase:XB-GENE-993445
Locus tag
XELAEV_18016149mg
See related
EnsemblRapid:ENSXLAG00005021016 AllianceGenome:Xenbase:XB-GENE-993445
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fp757; p38ip; spt20; fam48a; supt20h
Summary
Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. Orthologous to human SUPT20H (SPT20 homolog, SAGA complex component). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See supt20h.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
27
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (143502604..143562576)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (134533660..134594037)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily C, member 4 S homeolog Neighboring gene periostin, osteoblast specific factor S homeolog Neighboring gene exosome component 8 S homeolog Neighboring gene ALG5, dolichyl-phosphate beta-glucosyltransferase S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SPT20 homolog, SAGA complex component S homeolog
Names
family with sequence similarity 48, member A
suppressor of Ty 20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096695.1 → NP_001090164.1  SPT20 homolog, SAGA complex component S homeolog

    See identical proteins and their annotated locations for NP_001090164.1

    Status: PROVISIONAL

    Source sequence(s)
    BC111516
    UniProtKB/TrEMBL
    A0A974DJZ2, Q2T9H8
    Related
    ENSXLAP00005061697.1, ENSXLAT00005063152.1
    Conserved Domains (1) summary
    pfam12090
    Location:63 → 225
    Spt20; Spt20 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    143502604..143562576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248481.2 → XP_018103970.1  SPT20 homolog, SAGA complex component S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HAF7, A0A974DJB5, A0A974DJZ2
    Related
    ENSXLAP00005061810.1, ENSXLAT00005063262.1

  2. XM_041583236.1 → XP_041439170.1  SPT20 homolog, SAGA complex component S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1MDL2, A0A974DJZ2
    Related
    ENSXLAP00005061786.1, ENSXLAT00005063239.1
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  3. XM_018248485.2 → XP_018103974.1  SPT20 homolog, SAGA complex component S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J0UIN1, A0A974DJZ2

  4. XM_018248486.2 → XP_018103975.1  SPT20 homolog, SAGA complex component S homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J0ULH5, A0A974DJZ2

  5. XM_018248484.2 → XP_018103973.1  SPT20 homolog, SAGA complex component S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UHE0, A0A974DJZ2

  6. XM_018248482.2 → XP_018103971.1  SPT20 homolog, SAGA complex component S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HAF7, A0A974DJB5, A0A974DJZ2

  7. XM_018248483.2 → XP_018103972.1  SPT20 homolog, SAGA complex component S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HAF7, A0A974DJB5, A0A974DJZ2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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