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uvrag.L UV radiation resistance associated L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735238, updated on 4-Nov-2024

Summary

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Official Symbol
uvrag.L
Official Full Name
UV radiation resistance associated L homeolog
Primary source
Xenbase:XB-GENE-865771
Locus tag
XELAEV_18014068mg
See related
EnsemblRapid:ENSXLAG00005013478 AllianceGenome:Xenbase:XB-GENE-865771
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
uvrag
Summary
Predicted to enable SNARE binding activity. Predicted to act upstream of or within SNARE complex assembly. Predicted to be located in endosome and lytic vacuole. Predicted to be part of protein-containing complex. Orthologous to human UVRAG (UV radiation resistance associated). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See uvrag.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (185533292..185602060, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (178729460..178799219)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene sialidase-3-like Neighboring gene Wnt family member 11 L homeolog Neighboring gene diacylglycerol O-acyltransferase 2 L homeolog Neighboring gene monoacylglycerol O-acyltransferase 2, gene 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC131135

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within SNARE complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in lytic vacuole IEA
Inferred from Electronic Annotation
more info
  
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
UV radiation resistance associated L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096689.1 → NP_001090158.1  UV radiation resistance associated L homeolog

    See identical proteins and their annotated locations for NP_001090158.1

    Status: PROVISIONAL

    Source sequence(s)
    BC110772
    UniProtKB/TrEMBL
    A0A974I062, Q2TAQ4
    Related
    ENSXLAP00005039793.1, ENSXLAT00005040714.1
    Conserved Domains (3) summary
    cd00030
    Location:25 → 105
    C2; C2 domain
    pfam10186
    Location:197 → 376
    Atg14; Vacuolar sorting 38 and autophagy-related subunit 14
    pfam13863
    Location:224 → 306
    DUF4200; Domain of unknown function (DUF4200)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    185533292..185602060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581129.1 → XP_041437063.1  UV radiation resistance associated L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M5W3
    Conserved Domains (2) summary
    cd00030
    Location:52 → 132
    C2; C2 domain
    pfam10186
    Location:224 → 448
    Atg14; Vacuolar sorting 38 and autophagy-related subunit 14
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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