pick1.L protein interacting with PRKCA 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: pick1.L
Official Full Name: protein interacting with PRKCA 1 L homeolog
Primary source: Xenbase:XB-GENE-959381
Locus tag: XELAEV_18023894mg
See related: EnsemblRapid:ENSXLAG00005026903
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: pick1; prkcabp
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Genomic context

Location:: chromosome: 4L

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4L	NC_054377.1 (128041637..128059481)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4L	NC_030730.1 (122807893..122823993)

Chromosome 4L - NC_054377.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info
enables phospholipid binding	IEA Inferred from Electronic Annotation more info
enables protein domain specific binding	IEA Inferred from Electronic Annotation more info
enables protein kinase C binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within dendritic spine maintenance	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within intracellular protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of receptor internalization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within receptor clustering	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of Arp2/3 complex-mediated actin nucleation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in intracellular membrane-bounded organelle	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in neuron projection	IEA Inferred from Electronic Annotation more info
located_in perinuclear region of cytoplasm	IEA Inferred from Electronic Annotation more info
located_in postsynaptic density	IEA Inferred from Electronic Annotation more info
located_in postsynaptic early endosome	IEA Inferred from Electronic Annotation more info
located_in synapse	IEA Inferred from Electronic Annotation more info
located_in synaptic vesicle	IEA Inferred from Electronic Annotation more info
located_in trans-Golgi network membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein interacting with PRKCA 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096678.1 → NP_001090147.1 protein interacting with PRKCA 1 L homeolog

See identical proteins and their annotated locations for NP_001090147.1

Status: PROVISIONAL

Source sequence(s)

BC108636

UniProtKB/TrEMBL

A0A974D5U9, Q32NG7

Related

ENSXLAP00005080087.1, ENSXLAT00005081680.1

Conserved Domains (2) summary

cd07659
Location:146 → 360

BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

cd00992
Location:22 → 99

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

128041637..128059481

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_018256957.2 → XP_018112446.1 protein interacting with PRKCA 1 L homeolog isoform X2

UniProtKB/TrEMBL

A0A974D5U9, Q32NG7

Conserved Domains (2) summary

cd07659
Location:146 → 360

BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

cd00992
Location:22 → 99

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_018256959.2 → XP_018112448.1 protein interacting with PRKCA 1 L homeolog isoform X2

UniProtKB/TrEMBL

A0A974D5U9, Q32NG7

Conserved Domains (2) summary

cd07659
Location:146 → 360

BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

cd00992
Location:22 → 99

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_018256963.2 → XP_018112452.1 protein interacting with PRKCA 1 L homeolog isoform X3

UniProtKB/TrEMBL

A0A8J0UZU0
XM_018256962.2 → XP_018112451.1 protein interacting with PRKCA 1 L homeolog isoform X3

UniProtKB/TrEMBL

A0A8J0UZU0

Related

ENSXLAP00005080288.1, ENSXLAT00005081881.1
XM_041589447.1 → XP_041445381.1 protein interacting with PRKCA 1 L homeolog isoform X2

UniProtKB/TrEMBL

A0A974D5U9, Q32NG7

Conserved Domains (2) summary

cd07659
Location:146 → 360

BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

cd00992
Location:22 → 99

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_041589446.1 → XP_041445380.1 protein interacting with PRKCA 1 L homeolog isoform X1

UniProtKB/TrEMBL

A0A8J1MWK8

Related

ENSXLAP00005080185.1, ENSXLAT00005081778.1

Conserved Domains (2) summary

cd07659
Location:153 → 367

BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1

cd00992
Location:29 → 106

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...