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gdpd1.L glycerophosphodiester phosphodiesterase domain containing 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735217, updated on 4-Nov-2024

Summary

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Official Symbol
gdpd1.L
Official Full Name
glycerophosphodiester phosphodiesterase domain containing 1 L homeolog
Primary source
Xenbase:XB-GENE-6254085
Locus tag
XELAEV_18001338mg
See related
EnsemblRapid:ENSXLAG00005024068 AllianceGenome:Xenbase:XB-GENE-6254085
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
gdpd1
Summary
Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Predicted to act upstream of or within glycerophospholipid catabolic process. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See gdpd1.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (135387740..135393136, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694813.1 (967542..972938)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene T-box 6 L homeolog Neighboring gene T-box 6 related L homeolog Neighboring gene nudix hydrolase 9 L homeolog Neighboring gene sulfotransferase family cytosolic 1B member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC131039

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase domain containing 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096670.1 → NP_001090139.1  glycerophosphodiester phosphodiesterase domain containing 1 L homeolog

    See identical proteins and their annotated locations for NP_001090139.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108563
    UniProtKB/TrEMBL
    Q32NM3
    Related
    ENSXLAP00005071324.1, ENSXLAT00005072871.1
    Conserved Domains (2) summary
    cd08612
    Location:13 → 310
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
    pfam03009
    Location:44 → 301
    GDPD; Glycerophosphoryl diester phosphodiesterase family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    135387740..135393136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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