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dynlt5.L dynein light chain Tctex-type family member 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735195, updated on 4-Nov-2024

Summary

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Official Symbol
dynlt5.L
Official Full Name
dynein light chain Tctex-type family member 5 L homeolog
Primary source
Xenbase:XB-GENE-6254257
Locus tag
XELAEV_18022975mg
See related
EnsemblRapid:ENSXLAG00005011898 AllianceGenome:Xenbase:XB-GENE-6254257
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
Dynlt5-a; tctex1d1; tctex1d1-a; tctex1d1-b; tctex1d1.L
Summary
Predicted to enable dynein intermediate chain binding activity. Predicted to act upstream of or within microtubule-based movement. Predicted to be located in cytoplasm. Predicted to be part of cytoplasmic dynein complex. Orthologous to human DYNLT5 (dynein light chain Tctex-type family member 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See dynlt5.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (78520994..78532105, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (73222252..73230775, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108714215 Neighboring gene insulin like 5 L homeolog Neighboring gene SH3GL interacting endocytic adaptor 1 L homeolog Neighboring gene volume-regulated anion channel subunit LRRC8C-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC131312

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables dynein intermediate chain binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within microtubule-based movement IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytoplasmic dynein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dynein light chain Tctex-type 5-A
Names
Tctex1 domain containing 1 L homeolog
dynein light chain Tctex-type 5 L homeolog
tctex1 domain-containing protein 1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096648.1 → NP_001090117.1  dynein light chain Tctex-type 5-A

    See identical proteins and their annotated locations for NP_001090117.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106550
    UniProtKB/Swiss-Prot
    A2VDD2, Q3B8D7
    UniProtKB/TrEMBL
    A0A1L8GLV0, A0A974D392
    Related
    ENSXLAP00005034826.1, ENSXLAT00005035709.1
    Conserved Domains (1) summary
    cd21458
    Location:74 → 177
    DLC-like_TCTEX1D1; dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 1 (TCTEX1D1) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    78520994..78532105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589444.1 → XP_041445378.1  dynein light chain Tctex-type 5-A isoform X1

    UniProtKB/Swiss-Prot
    A2VDD2, Q3B8D7
    UniProtKB/TrEMBL
    A0A1L8GLV0, A0A974D392
    Conserved Domains (1) summary
    cd21458
    Location:74 → 177
    DLC-like_TCTEX1D1; dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 1 (TCTEX1D1) and similar proteins

  2. XM_018256955.2 → XP_018112444.1  dynein light chain Tctex-type 5-A isoform X1

    UniProtKB/Swiss-Prot
    A2VDD2, Q3B8D7
    UniProtKB/TrEMBL
    A0A1L8GLV0, A0A974D392
    Conserved Domains (1) summary
    cd21458
    Location:74 → 177
    DLC-like_TCTEX1D1; dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 1 (TCTEX1D1) and similar proteins

  3. XM_018256954.2 → XP_018112443.1  dynein light chain Tctex-type 5-A isoform X1

    UniProtKB/Swiss-Prot
    A2VDD2, Q3B8D7
    UniProtKB/TrEMBL
    A0A1L8GLV0, A0A974D392
    Conserved Domains (1) summary
    cd21458
    Location:74 → 177
    DLC-like_TCTEX1D1; dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 1 (TCTEX1D1) and similar proteins

  4. XM_018256953.2 → XP_018112442.1  dynein light chain Tctex-type 5-A isoform X1

    UniProtKB/Swiss-Prot
    A2VDD2, Q3B8D7
    UniProtKB/TrEMBL
    A0A1L8GLV0, A0A974D392
    Conserved Domains (1) summary
    cd21458
    Location:74 → 177
    DLC-like_TCTEX1D1; dynein light chain (DLC)-like domain found in Tctex1 domain-containing protein 1 (TCTEX1D1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3B8D7.1 GenPept UniProtKB/Swiss-Prot:Q3B8D7

Gene LinkOut

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