U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rnps1.L RNA binding protein S1, serine-rich domain L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735191, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
rnps1.L
Official Full Name
RNA binding protein S1, serine-rich domain L homeolog
Primary source
Xenbase:XB-GENE-6254260
Locus tag
XELAEV_18045402mg
See related
EnsemblRapid:ENSXLAG00005019261
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rnps1; rnps1-a; rnps1-b; rnps1.S
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rnps1.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (115403320..115410774, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (104797655..104804546, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene chromosome 9 C8orf33 homolog L homeolog Neighboring gene hypothetical protein MGC145260 L homeolog Neighboring gene uncharacterized LOC108701619 Neighboring gene WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC131270

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ASAP complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA-binding protein with serine-rich domain 1-B
Names
RNA binding protein S1, serine-rich domain S homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096645.1 → NP_001090114.1  RNA-binding protein with serine-rich domain 1-B

    See identical proteins and their annotated locations for NP_001090114.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106519
    UniProtKB/Swiss-Prot
    Q3KPW1
    Related
    ENSXLAP00005056712.1, ENSXLAT00005057991.1
    Conserved Domains (2) summary
    COG0724
    Location:117 → 210
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12365
    Location:140 → 213
    RRM_RNPS1; RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    115403320..115410774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234634.2 → XP_018090123.1  RNA-binding protein with serine-rich domain 1-B isoform X1

    UniProtKB/TrEMBL
    A0A8J0TSK9
    Related
    ENSXLAP00005056733.1, ENSXLAT00005058018.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3KPW1.1 GenPept UniProtKB/Swiss-Prot:Q3KPW1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.