sf3b5.S splicing factor 3b subunit 5 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: sf3b5.S
Official Full Name: splicing factor 3b subunit 5 S homeolog
Primary source: Xenbase:XB-GENE-6254262
Locus tag: XELAEV_18029131mg
See related: EnsemblRapid:ENSXLAG00005007079 AllianceGenome:Xenbase:XB-GENE-6254262
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ysf3; sf3b5; sf3b10
Summary: Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and precatalytic spliceosome. Orthologous to human SF3B5 (splicing factor 3b subunit 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 5S

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5S	NC_054380.1 (50189560..50190221, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5S	NC_030733.1 (49895892..49896553, complement)

Chromosome 5S - NC_054380.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA splicing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U2 snRNP	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of precatalytic spliceosome	IEA Inferred from Electronic Annotation more info
part_of spliceosomal complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: splicing factor 3b, subunit 5

Names: splicing factor 3b, subunit 5, 10kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001171762.1 → NP_001165233.1 splicing factor 3b, subunit 5

See identical proteins and their annotated locations for NP_001165233.1

Status: PROVISIONAL

Source sequence(s)

BC106478

UniProtKB/TrEMBL

A0A974HHG9, Q3KPY6

Related

ENSXLAP00005020474.1, ENSXLAT00005020997.1

Conserved Domains (1) summary

pfam07189
Location:3 → 77

SF3b10; Splicing factor 3B subunit 10 (SF3b10)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

50189560..50190221 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)