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pipox.L pipecolic acid oxidase L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735186, updated on 4-Nov-2024

Summary

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Official Symbol
pipox.L
Official Full Name
pipecolic acid oxidase L homeolog
Primary source
Xenbase:XB-GENE-1013126
Locus tag
XELAEV_18011686mg
See related
EnsemblRapid:ENSXLAG00005029682 AllianceGenome:Xenbase:XB-GENE-1013126
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pipox
Summary
Predicted to enable L-pipecolate oxidase activity; flavin adenine dinucleotide binding activity; and sarcosine oxidase activity. Predicted to act upstream of or within L-lysine catabolic process to acetyl-CoA via L-pipecolate. Predicted to be located in peroxisome. Orthologous to human PIPOX (pipecolic acid and sarcosine oxidase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pipox.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (33178687..33202335, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (32108322..32132103, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene provisional ortholog of gap junction protein delta 2 L homeolog Neighboring gene myosin XVIIIA L homeolog Neighboring gene seizure related 6 homolog L homeolog Neighboring gene PHD finger protein 12 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein interactomes of protein phosphatase 2A B55 regulatory subunits reveal B55-mediated regulation of replication protein A under replication stress. Wang F, et al. Sci Rep, 2018 Feb 8. PMID 29422626, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC131181

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables L-pipecolate oxidase activity IEA
Inferred from Electronic Annotation
more info
  
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables sarcosine oxidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within L-lysine catabolic process to acetyl-CoA via L-pipecolate IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pipecolic acid oxidase L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096641.1 → NP_001090110.1  pipecolic acid oxidase L homeolog

    See identical proteins and their annotated locations for NP_001090110.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106466
    UniProtKB/TrEMBL
    A0A974HXP6, Q3KPZ3
    Related
    ENSXLAP00005088686.1, ENSXLAT00005090355.1
    Conserved Domains (2) summary
    TIGR01377
    Location:9 → 391
    soxA_mon; sarcosine oxidase, monomeric form
    pfam13450
    Location:13 → 39
    NAD_binding_8; NAD(P)-binding Rossmann-like domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    33178687..33202335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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