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septin9.S septin 9 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735161, updated on 4-Nov-2024

Summary

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Official Symbol
septin9.S
Official Full Name
septin 9 S homeolog
Primary source
Xenbase:XB-GENE-6254273
Locus tag
XELAEV_18046749mg
See related
EnsemblRapid:ENSXLAG00005015371 AllianceGenome:Xenbase:XB-GENE-6254273
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sept9; sept9.S
Summary
Predicted to enable GTP binding activity; GTPase activity; and molecular adaptor activity. Predicted to act upstream of or within cytoskeleton-dependent cytokinesis. Predicted to be located in cell division site; microtubule cytoskeleton; and septin ring. Predicted to be part of septin complex. Human ortholog(s) of this gene implicated in brachial plexus neuritis and colorectal cancer. Orthologous to human SEPTIN9 (septin 9). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See septin9.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (41398746..41514302, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (34764495..34880407, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene trinucleotide repeat containing 6C S homeolog Neighboring gene uncharacterized LOC121399144 Neighboring gene uncharacterized LOC121399110 Neighboring gene T-cell antigen CD7 Neighboring gene dehydrogenase/reductase (SDR family) member 7C S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC115227

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
part_of septin complex IEA
Inferred from Electronic Annotation
more info
  
located_in septin ring IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
septin 9 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096617.1 → NP_001090086.1  septin 9 S homeolog

    See identical proteins and their annotated locations for NP_001090086.1

    Status: PROVISIONAL

    Source sequence(s)
    BC100227
    UniProtKB/TrEMBL
    Q498G4
    Related
    ENSXLAP00005045026.1, ENSXLAT00005046125.1
    Conserved Domains (2) summary
    cd01850
    Location:46 → 320
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:28 → 321
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    41398746..41514302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237621.2 → XP_018093110.1  septin 9 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8EMZ3, A0A974BTW5
    Related
    ENSXLAP00005045052.1, ENSXLAT00005046151.1

  2. XM_018237623.2 → XP_018093112.1  septin 9 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0TZD2
    Related
    ENSXLAP00005045043.1, ENSXLAT00005046144.1

  3. XM_018237622.2 → XP_018093111.1  septin 9 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0TY57
    Related
    ENSXLAP00005045039.1, ENSXLAT00005046138.1

  4. XM_018237625.2 → XP_018093114.1  septin 9 S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J0U111
Nucleotide Protein Strain
Heading Accession and Version

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