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smarcd3.S SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735086, updated on 17-Aug-2024

Summary

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Official Symbol
smarcd3.S
Official Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 S homeolog
Primary source
Xenbase:XB-GENE-6254492
Locus tag
XELAEV_18046104mg
See related
EnsemblRapid:ENSXLAG00005036390
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rsc6p; baf60c; cracd3; smarcd3
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Genomic context

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Location:
chromosome: 9_10S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (6826119..6840803)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (6695692..6710566)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene acid sensing ion channel subunit 2 S homeolog Neighboring gene uncharacterized LOC108702569 Neighboring gene alpha-2-HS-glycoprotein L homeolog Neighboring gene sodium channel protein type 4 subunit alpha Neighboring gene proteasome 26S subunit, ATPase 5 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115001

General protein information

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Preferred Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096545.1 → NP_001090014.1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 S homeolog

    Status: PROVISIONAL

    Source sequence(s)
    BC094087
    UniProtKB/TrEMBL
    Q52L33
    Related
    ENSXLAP00005109018.1, ENSXLAT00005111201.1
    Conserved Domains (3) summary
    COG5531
    Location:161 → 359
    Rsc6; Chromatin remodeling complex protein RSC6, contains SWIB domain [Chromatin structure and dynamics]
    pfam08430
    Location:1 → 56
    Forkhead_N; Forkhead N-terminal region
    pfam02201
    Location:244 → 315
    SWIB; SWIB/MDM2 domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    6826119..6840803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041577874.1 → XP_041433808.1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LWD7, Q66IP7
    Conserved Domains (2) summary
    cd17675
    Location:237 → 316
    SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins
    pfam08430
    Location:1 → 72
    Forkhead_N; Forkhead N-terminal region

  2. XM_041577873.1 → XP_041433807.1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8EL76, A0A974BSE1, Q66IP7
    Related
    ENSXLAP00005109023.1, ENSXLAT00005111206.1
    Conserved Domains (1) summary
    cd17675
    Location:257 → 336
    SWIB_BAF60B; SWIB domain found in BRG1-associated factor 60B (BAF60B) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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