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rabgap1l.S RAB GTPase activating protein 1-like S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734990, updated on 4-Nov-2024

Summary

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Official Symbol
rabgap1l.S
Official Full Name
RAB GTPase activating protein 1-like S homeolog
Primary source
Xenbase:XB-GENE-864994
Locus tag
XELAEV_18025305mg
See related
EnsemblRapid:ENSXLAG00005022318 AllianceGenome:Xenbase:XB-GENE-864994
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hhl; tbc1d18; rabgap1l
Summary
Orthologous to human RABGAP1L (RAB GTPase activating protein 1 like). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See rabgap1l.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (77534527..77683303, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (71327880..71479430, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108715615 Neighboring gene centromere protein L S homeolog Neighboring gene G protein-coupled receptor 52 S homeolog Neighboring gene ring finger and CCCH-type domains 1 S homeolog Neighboring gene serpin peptidase inhibitor, clade C (antithrombin), member 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130926

General protein information

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Preferred Names
RAB GTPase activating protein 1-like S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096453.1 → NP_001089922.1  RAB GTPase activating protein 1-like S homeolog

    See identical proteins and their annotated locations for NP_001089922.1

    Status: PROVISIONAL

    Source sequence(s)
    BC110738
    UniProtKB/TrEMBL
    A0A974HM79, Q2TAT3
    Related
    ENSXLAP00005065756.1, ENSXLAT00005067272.1
    Conserved Domains (4) summary
    smart00164
    Location:530 → 739
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd01211
    Location:125 → 253
    PTB_Rab6GAP; GTPase activating protein for Rab 6 Phosphotyrosine-binding (PTB) domain
    pfam12473
    Location:336 → 417
    DUF3694; Kinesin protein
    pfam14612
    Location:780 → 826
    Ino80_Iec3; IEC3 subunit of the Ino80 complex, chromatin re-modelling

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    77534527..77683303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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