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ptcd3.L pentatricopeptide repeat domain 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734981, updated on 4-Nov-2024

Summary

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Official Symbol
ptcd3.L
Official Full Name
pentatricopeptide repeat domain 3 L homeolog
Primary source
Xenbase:XB-GENE-961486
Locus tag
XELAEV_18005006mg
See related
EnsemblRapid:ENSXLAG00005020583 AllianceGenome:Xenbase:XB-GENE-961486
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ptcd3
Summary
Predicted to enable rRNA binding activity and ribosomal small subunit binding activity. Predicted to act upstream of or within mitochondrial translation. Predicted to be located in mitochondrion. Predicted to be part of ribonucleoprotein complex. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 51. Orthologous to human PTCD3 (pentatricopeptide repeat domain 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ptcd3.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (18957521..18977974, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (10154944..10175415, complement)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 1 L homeolog Neighboring gene inner membrane protein, mitochondrial L homeolog Neighboring gene small nucleolar RNA SNORD94 Neighboring gene small nucleolar RNA SNORD94 Neighboring gene small nucleolar RNA SNORD94 Neighboring gene mitochondrial ribosomal protein L35 L homeolog Neighboring gene polymerase (RNA) I polypeptide A L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC132237

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables rRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables ribosomal small subunit binding IEA
Inferred from Electronic Annotation
more info
  
enables ribosomal small subunit binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mitochondrial translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitochondrial translation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within regulation of translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein mS39
Names
pentatricopeptide repeat domain-containing protein 3, mitochondrial
pentatricopeptide repeat-containing protein 3, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096445.1 → NP_001089914.1  small ribosomal subunit protein mS39 precursor

    See identical proteins and their annotated locations for NP_001089914.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108830
    UniProtKB/Swiss-Prot
    Q32N55, Q52KZ1
    UniProtKB/TrEMBL
    A0A974DW27
    Related
    ENSXLAP00005060478.1, ENSXLAT00005061927.1
    Conserved Domains (2) summary
    sd00004
    Location:278 → 310
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:275 → 328
    PPR_2; PPR repeat family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    18957521..18977974 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q32N55.1 GenPept UniProtKB/Swiss-Prot:Q32N55

Gene LinkOut

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