suclg2.L succinate-CoA ligase, GDP-forming, beta subunit L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: suclg2.L
Official Full Name: succinate-CoA ligase, GDP-forming, beta subunit L homeolog
Primary source: Xenbase:XB-GENE-956246
Locus tag: XELAEV_18024118mg
See related: EnsemblRapid:ENSXLAG00005005537 AllianceGenome:Xenbase:XB-GENE-956246
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: gbeta; suclg2
Summary: Predicted to enable magnesium ion binding activity; purine ribonucleoside triphosphate binding activity; and succinate-CoA ligase activity. Predicted to act upstream of or within succinyl-CoA metabolic process and tricarboxylic acid cycle. Predicted to be located in mitochondrion. Predicted to be part of succinate-CoA ligase complex. Orthologous to human SUCLG2 (succinate-CoA ligase GDP-forming subunit beta). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4L

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4L	NC_054377.1 (144242545..144397303)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4L	NC_030730.1 (139007311..139162084)

Chromosome 4L - NC_054377.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables ligase activity	IEA Inferred from Electronic Annotation more info
enables magnesium ion binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables succinate-CoA ligase (ADP-forming) activity	IEA Inferred from Electronic Annotation more info
enables succinate-CoA ligase (GDP-forming) activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within succinyl-CoA metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within tricarboxylic acid cycle	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
part_of succinate-CoA ligase complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: succinate-CoA ligase, GDP-forming, beta subunit L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096439.1 → NP_001089908.1 succinate-CoA ligase, GDP-forming, beta subunit L homeolog

See identical proteins and their annotated locations for NP_001089908.1

Status: PROVISIONAL

Source sequence(s)

BC108802

UniProtKB/TrEMBL

A0A974D876, Q2VPG9

Related

ENSXLAP00005016376.1, ENSXLAT00005016670.1

Conserved Domains (3) summary

PRK00696
Location:38 → 430

sucC; succinyl-CoA synthetase subunit beta; Provisional

pfam00549
Location:305 → 425

Ligase_CoA; CoA-ligase

pfam08442
Location:38 → 246

ATP-grasp_2; ATP-grasp domain