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gatd1.L glutamine amidotransferase class 1 domain containing 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734963, updated on 18-Sep-2024

Summary

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Official Symbol
gatd1.L
Official Full Name
glutamine amidotransferase class 1 domain containing 1 L homeolog
Primary source
Xenbase:XB-GENE-1005355
Locus tag
XELAEV_18022110mg
See related
EnsemblRapid:ENSXLAG00005018987
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
Fy-5; gatd1; pddc1; pddc1.L
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Genomic context

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See gatd1.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (23205663..23216152)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (21661396..21671942)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 (mitochondrial carrier: glutamate), member 22 L homeolog Neighboring gene uncharacterized LOC121402965 Neighboring gene uncharacterized LOC108713867 Neighboring gene synoviolin 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC131322

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glyoxalase III activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in early endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glutamine amidotransferase-like class 1 domain-containing protein 1
Names
Parkinson disease 7 domain containing 1 L homeolog
Parkinson disease 7 domain-containing protein 1
ferry endosomal RAB5 effector complex subunit 5
glutamine amidotransferase like class 1 domain containing 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096427.1 → NP_001089896.1  glutamine amidotransferase-like class 1 domain-containing protein 1 precursor

    See identical proteins and their annotated locations for NP_001089896.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108639
    UniProtKB/Swiss-Prot
    Q32NG4
    UniProtKB/TrEMBL
    A0A974HMW9
    Related
    ENSXLAP00005056010.1, ENSXLAT00005057239.1
    Conserved Domains (2) summary
    cd03141
    Location:21 → 225
    GATase1_Hsp31_like; Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein
    COG0693
    Location:41 → 213
    ThiJ; Putative intracellular protease/amidase [General function prediction only]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    23205663..23216152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q32NG4.1 GenPept UniProtKB/Swiss-Prot:Q32NG4

Gene LinkOut

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