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fam3a.S FAM3 metabolism regulating signaling molecule A S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734921, updated on 4-Nov-2024

Summary

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Official Symbol
fam3a.S
Official Full Name
FAM3 metabolism regulating signaling molecule A S homeolog
Primary source
Xenbase:XB-GENE-17342156
Locus tag
XELAEV_18041695mg
See related
EnsemblRapid:ENSXLAG00005015023 AllianceGenome:Xenbase:XB-GENE-17342156
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
x-ap7
Summary
Predicted to enable carbohydrate binding activity. Predicted to be located in extracellular space and membrane. Orthologous to human FAM3A (FAM3 metabolism regulating signaling molecule A). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See fam3a.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (35040349..35070575)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (34746211..34761266)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108699969 Neighboring gene glucose-6-phosphate dehydrogenase S homeolog Neighboring gene ceramide kinase like 2 S homeolog Neighboring gene P3 protein-like Neighboring gene uncharacterized LOC121397738 Neighboring gene EEIG family member 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC131013

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC734921

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096386.1 → NP_001089855.1  uncharacterized protein LOC734921

    See identical proteins and their annotated locations for NP_001089855.1

    Status: PREDICTED

    Source sequence(s)
    BC108550
    UniProtKB/TrEMBL
    A0A974C2Q2, Q32NN5
    Related
    ENSXLAP00005044014.1, ENSXLAT00005045086.1
    Conserved Domains (1) summary
    cd13940
    Location:53 → 223
    ILEI_FAM3C; Interleukin-like EMT inducer

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    35040349..35070575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018232135.2 → XP_018087624.1  uncharacterized protein LOC734921 isoform X3

    UniProtKB/TrEMBL
    A0A974C2Q2, Q32NN5

  2. XM_041574328.1 → XP_041430262.1  uncharacterized protein LOC734921 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LL24
    Conserved Domains (1) summary
    cd13940
    Location:77 → 222
    ILEI_FAM3C; Interleukin-like EMT inducer

  3. XM_041574329.1 → XP_041430263.1  uncharacterized protein LOC734921 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LL24
    Conserved Domains (1) summary
    cd13940
    Location:77 → 222
    ILEI_FAM3C; Interleukin-like EMT inducer

  4. XM_018232133.2 → XP_018087622.1  uncharacterized protein LOC734921 isoform X1

    UniProtKB/TrEMBL
    A0A8J0TMU7
Nucleotide Protein Strain
Heading Accession and Version

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