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foxc1.L forkhead box C1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734912, updated on 17-Aug-2024

Summary

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Official Symbol
foxc1.L
Official Full Name
forkhead box C1 L homeolog
Primary source
Xenbase:XB-GENE-865236
Locus tag
XELAEV_18031569mg
See related
EnsemblRapid:ENSXLAG00005009484
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
igda; ihg1; fkhl7; foxc1; irid1; rieg3; freac3; xfd-11; foxc1-a; foxc1-b; foxc1.S; freac-3
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Genomic context

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Location:
chromosome: 6L
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (91288490..91290840, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (84645137..84647280, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene Werner helicase interacting protein 1 L homeolog Neighboring gene myosin light chain kinase family member 4 L homeolog Neighboring gene GDP-mannose 4,6-dehydratase L homeolog Neighboring gene forkhead box F2 L homeolog Neighboring gene forkhead box Q1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130988

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within cell adhesion ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within cellular response to chemokine ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within chemokine-mediated signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within mesoderm development ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within pronephros development ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
forkhead box protein C1-B
Names
forkhead box C1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096377.1 → NP_001089846.1  forkhead box protein C1-B

    See identical proteins and their annotated locations for NP_001089846.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108535
    UniProtKB/Swiss-Prot
    Q32NP8
    UniProtKB/TrEMBL
    A0A974HFT3
    Related
    ENSXLAP00005027684.1, ENSXLAT00005028418.1
    Conserved Domains (1) summary
    smart00339
    Location:79 → 167
    FH; FORKHEAD

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    91288490..91290840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q32NP8.1 GenPept UniProtKB/Swiss-Prot:Q32NP8

Gene LinkOut

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Molecular Biology Databases
Research Materials