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stx5.L syntaxin 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734883, updated on 4-Nov-2024

Summary

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Official Symbol
stx5.L
Official Full Name
syntaxin 5 L homeolog
Primary source
Xenbase:XB-GENE-959068
Locus tag
XELAEV_18022239mg
See related
EnsemblRapid:ENSXLAG00005019739 AllianceGenome:Xenbase:XB-GENE-959068
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
stx5; stx5.S
Summary
Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to act upstream of or within several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; vesicle docking; and vesicle fusion. Predicted to be located in Golgi membrane. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type II. Orthologous to human STX5 (syntaxin 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See stx5.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (27561061..27572743)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (26040447..26051911)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene reticulon 3 L homeolog Neighboring gene atlastin GTPase 3 L homeolog Neighboring gene protein RD3 Neighboring gene nuclear RNA export factor 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC114979

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle docking IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle fusion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
  
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
syntaxin 5 L homeolog
Names
syntaxin 5 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096349.1 → NP_001089818.1  syntaxin 5 L homeolog

    See identical proteins and their annotated locations for NP_001089818.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106704
    UniProtKB/TrEMBL
    A0A974D3X2, Q3KPJ9
    Related
    ENSXLAP00005057970.1, ENSXLAT00005059327.1
    Conserved Domains (3) summary
    COG5325
    Location:40 → 267
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:209 → 281
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:1 → 20
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    27561061..27572743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589436.1 → XP_041445370.1  syntaxin 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MU66, A0A974D3X2
    Related
    ENSXLAP00005057961.1, ENSXLAT00005059318.1
    Conserved Domains (2) summary
    COG5325
    Location:84 → 311
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:253 → 325
    SNARE_syntaxin5; SNARE motif of syntaxin 5

  2. XM_041589437.1 → XP_041445371.1  syntaxin 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MU66, A0A974D3X2
    Conserved Domains (2) summary
    COG5325
    Location:84 → 311
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:253 → 325
    SNARE_syntaxin5; SNARE motif of syntaxin 5

  3. XM_041589439.1 → XP_041445373.1  syntaxin 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MU66, A0A974D3X2
    Conserved Domains (2) summary
    COG5325
    Location:84 → 311
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:253 → 325
    SNARE_syntaxin5; SNARE motif of syntaxin 5

  4. XM_041589438.1 → XP_041445372.1  syntaxin 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MU66, A0A974D3X2
    Related
    ENSXLAP00005057957.1, ENSXLAT00005059314.1
    Conserved Domains (2) summary
    COG5325
    Location:84 → 311
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:253 → 325
    SNARE_syntaxin5; SNARE motif of syntaxin 5

  5. XM_041589440.1 → XP_041445374.1  syntaxin 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MU66, A0A974D3X2
    Related
    ENSXLAP00005057966.1, ENSXLAT00005059323.1
    Conserved Domains (2) summary
    COG5325
    Location:84 → 311
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:253 → 325
    SNARE_syntaxin5; SNARE motif of syntaxin 5
Nucleotide Protein Strain
Heading Accession and Version

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