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ribc1.L RIB43A domain with coiled-coils 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734837, updated on 4-Nov-2024

Summary

Official Symbol
ribc1.L
Official Full Name
RIB43A domain with coiled-coils 1 L homeolog
Primary source
Xenbase:XB-GENE-5787785
Locus tag
XELAEV_18004136mg
See related
EnsemblRapid:ENSXLAG00005020667 AllianceGenome:Xenbase:XB-GENE-5787785
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ribc1; ribc1.S
Summary
Orthologous to human RIBC1 (RIB43A domain with coiled-coils 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See ribc1.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (14783777..14857729)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694861.1 (812446..818595, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016728628.1 (173..518, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3B subunit 3-like Neighboring gene uncharacterized LOC121397132 Neighboring gene uncharacterized LOC121397133 Neighboring gene probable serine/threonine-protein kinase DDB_G0277449 Neighboring gene uncharacterized LOC121397135 Neighboring gene SH2 domain containing 3C L homeolog Neighboring gene cyclin-dependent kinase 9 L homeolog

Genomic regions, transcripts, and products

General protein information

Preferred Names
RIB43A domain with coiled-coils 1 L homeolog
Names
RIB43A domain with coiled-coils 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096304.1NP_001089773.1  RIB43A domain with coiled-coils 1 L homeolog

    See identical proteins and their annotated locations for NP_001089773.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106535
    UniProtKB/TrEMBL
    Q3B8E2
    Conserved Domains (1) summary
    pfam05914
    Location:4379
    RIB43A; RIB43A

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    14783777..14857729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572154.1XP_041428088.1  RIB43A domain with coiled-coils 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1LEW1
    Conserved Domains (2) summary
    PTZ00121
    Location:170366
    PTZ00121; MAEBL; Provisional
    cl21453
    Location:1452
    PKc_like; Protein Kinases, catalytic domain
  2. XM_041572157.1XP_041428091.1  RIB43A domain with coiled-coils 1 L homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J1LFA8
    Conserved Domains (2) summary
    PTZ00121
    Location:200396
    PTZ00121; MAEBL; Provisional
    cl21453
    Location:1182
    PKc_like; Protein Kinases, catalytic domain
  3. XM_041572152.1XP_041428086.1  RIB43A domain with coiled-coils 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LFA3
    Related
    ENSXLAP00005060644.1, ENSXLAT00005062093.1
    Conserved Domains (2) summary
    PTZ00121
    Location:200396
    PTZ00121; MAEBL; Provisional
    cl21453
    Location:1182
    PKc_like; Protein Kinases, catalytic domain
  4. XM_041572153.1XP_041428087.1  RIB43A domain with coiled-coils 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LEX7
    Conserved Domains (2) summary
    PTZ00121
    Location:199395
    PTZ00121; MAEBL; Provisional
    cl21453
    Location:1182
    PKc_like; Protein Kinases, catalytic domain
  5. XM_041572155.1XP_041428089.1  RIB43A domain with coiled-coils 1 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1LGC9
    Related
    ENSXLAP00005060656.1, ENSXLAT00005062105.1
    Conserved Domains (2) summary
    PTZ00121
    Location:165361
    PTZ00121; MAEBL; Provisional
    cl21453
    Location:150
    PKc_like; Protein Kinases, catalytic domain
  6. XM_041572156.1XP_041428090.1  RIB43A domain with coiled-coils 1 L homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J1LHD1
    Related
    ENSXLAP00005060595.1, ENSXLAT00005062044.1
    Conserved Domains (1) summary
    PTZ00121
    Location:131327
    PTZ00121; MAEBL; Provisional
  7. XM_041572158.1XP_041428092.1  RIB43A domain with coiled-coils 1 L homeolog isoform X7

    UniProtKB/TrEMBL
    A0A8J1LEY1
    Related
    ENSXLAP00005060606.1, ENSXLAT00005062055.1