shpk.L sedoheptulokinase L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: shpk.L
Official Full Name: sedoheptulokinase L homeolog
Primary source: Xenbase:XB-GENE-17336220
Locus tag: XELAEV_18011636mg
See related: EnsemblRapid:ENSXLAG00005031723 AllianceGenome:Xenbase:XB-GENE-17336220
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary: Predicted to enable sedoheptulokinase activity. Predicted to act upstream of or within cellular response to lipopolysaccharide; glycerol metabolic process; and phosphorylation. Predicted to be located in cytosol. Orthologous to human SHPK (sedoheptulokinase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 2L

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2L	NC_054373.1 (29514950..29532249, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2L	NC_030726.1 (29242711..29259999, complement)

Chromosome 2L - NC_054373.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables kinase activity	IEA Inferred from Electronic Annotation more info
enables sedoheptulokinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cellular response to lipopolysaccharide	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within glycerol metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within phosphorylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytosol	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC734825

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096292.1 → NP_001089761.1 uncharacterized protein LOC734825

See identical proteins and their annotated locations for NP_001089761.1

Status: PREDICTED

Source sequence(s)

BC106503

UniProtKB/TrEMBL

A0A974DL91, Q3KPX0

Conserved Domains (1) summary

cd07777
Location:1 → 335

FGGY_SHK_like; sedoheptulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

29514950..29532249 complement

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GenBank, FASTA, Sequence Viewer (Graphics)