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supt7l.L SPT7 like, STAGA complex gamma subunit [ Xenopus laevis (African clawed frog) ]

Gene ID: 734787, updated on 18-Sep-2024

Summary

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Official Symbol
supt7l.L
Official Full Name
SPT7 like, STAGA complex gamma subunit
Primary source
Xenbase:XB-GENE-945819
Locus tag
XELAEV_18026347mg
See related
EnsemblRapid:ENSXLAG00005034515
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
supt7l
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Genomic context

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See supt7l.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (20681515..20688486)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (20005116..20012051)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein MGC86483 L homeolog Neighboring gene solute carrier family 4 member 1 adaptor protein L homeolog Neighboring gene uncharacterized LOC108716510 Neighboring gene leucine rich repeat and fibronectin type III domain containing 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC131057

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SPT7 like, STAGA complex gamma subunit
Names
SPT7-like STAGA complex gamma subunit L homeolog
suppressor of Ty 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096255.2 → NP_001089724.1  SPT7 like, STAGA complex gamma subunit

    See identical proteins and their annotated locations for NP_001089724.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106409
    UniProtKB/TrEMBL
    A0A974CU72, A0A974CVH4, Q3KQ30
    Related
    ENSXLAP00005103164.1, ENSXLAT00005105169.1
    Conserved Domains (1) summary
    cl22885
    Location:149 → 223
    TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    20681515..20688486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018262107.2 → XP_018117596.1  SPT7 like, STAGA complex gamma subunit isoform X1

    UniProtKB/TrEMBL
    A0A974CU72, A0A974CVH4, Q3KQ30

  2. XM_018262106.2 → XP_018117595.1  SPT7 like, STAGA complex gamma subunit isoform X1

    UniProtKB/TrEMBL
    A0A974CU72, A0A974CVH4, Q3KQ30
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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