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zfyve27.L zinc finger FYVE domain containing 27 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734772, updated on 18-Sep-2024

Summary

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Official Symbol
zfyve27.L
Official Full Name
zinc finger FYVE domain containing 27 L homeolog
Primary source
Xenbase:XB-GENE-1012381
Locus tag
XELAEV_18000695mg
See related
EnsemblRapid:ENSXLAG00005031104
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
zfyve27
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Genomic context

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See zfyve27.L in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
27
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (28213643..28351093)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694985.1 (23583..49302, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene MMS19 nucleotide excision repair protein homolog Neighboring gene WD repeat-containing protein 87-like Neighboring gene uncharacterized LOC121396252 Neighboring gene uncharacterized LOC121396253 Neighboring gene uncharacterized LOC121396259 Neighboring gene uncharacterized LOC121396258 Neighboring gene uncharacterized LOC121396257

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130947

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within endoplasmic reticulum tubular network formation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within neuron projection development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within neurotrophin TRK receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of axon extension IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum tubular network IEA
Inferred from Electronic Annotation
more info
  
located_in growth cone membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger FYVE domain containing 27 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096240.1 → NP_001089709.1  zinc finger FYVE domain containing 27 L homeolog

    See identical proteins and their annotated locations for NP_001089709.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106378
    UniProtKB/TrEMBL
    Q3KQ56
    Related
    ENSXLAP00005093111.1, ENSXLAT00005094794.1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    28213643..28351093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041570583.1 → XP_041426517.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  2. XM_041570582.1 → XP_041426516.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  3. XM_041570567.1 → XP_041426501.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  4. XM_041570566.1 → XP_041426500.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  5. XM_041570568.1 → XP_041426502.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  6. XM_041570570.1 → XP_041426504.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  7. XM_041570569.1 → XP_041426503.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  8. XM_041570573.1 → XP_041426507.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  9. XM_041570572.1 → XP_041426506.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9

  10. XM_041570571.1 → XP_041426505.1  zinc finger FYVE domain containing 27 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBZ9
    Related
    ENSXLAP00005093313.1, ENSXLAT00005094996.1

  11. XM_041570575.1 → XP_041426509.1  zinc finger FYVE domain containing 27 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LC04

  12. XM_041570584.1 → XP_041426518.1  zinc finger FYVE domain containing 27 L homeolog isoform X9

    UniProtKB/TrEMBL
    A0A8J1LAG2
    Related
    ENSXLAP00005093446.1, ENSXLAT00005095130.1

  13. XM_041570577.1 → XP_041426511.1  zinc finger FYVE domain containing 27 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1LAJ9, A0A974BQE5

  14. XM_041570579.1 → XP_041426513.1  zinc finger FYVE domain containing 27 L homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J1LAF6, A0A974BQE5

  15. XM_041570576.1 → XP_041426510.1  zinc finger FYVE domain containing 27 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1LCX5, A0A974BQE5

  16. XM_041570578.1 → XP_041426512.1  zinc finger FYVE domain containing 27 L homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J1LAG0, A0A974BQE5

  17. XM_041570580.1 → XP_041426514.1  zinc finger FYVE domain containing 27 L homeolog isoform X7

    UniProtKB/TrEMBL
    A0A8J1LC10, A0A974BQE5

  18. XM_041570581.1 → XP_041426515.1  zinc finger FYVE domain containing 27 L homeolog isoform X8

    UniProtKB/TrEMBL
    A0A8J1LCY0, A0A974CBC6
    Related
    ENSXLAP00005093683.1, ENSXLAT00005095384.1

  19. XM_041570586.1 → XP_041426520.1  zinc finger FYVE domain containing 27 L homeolog isoform X10

    UniProtKB/TrEMBL
    A0A8J1LCY6
Nucleotide Protein Strain
Heading Accession and Version

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