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tnfaip8l2.S TNF alpha induced protein 8 like 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734764, updated on 18-Sep-2024

Summary

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Official Symbol
tnfaip8l2.S
Official Full Name
TNF alpha induced protein 8 like 2 S homeolog
Primary source
Xenbase:XB-GENE-6255285
Locus tag
XELAEV_18042810mg
See related
EnsemblRapid:ENSXLAG00005023806
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tipe2; tnfaip8l2; tnfaip8l2-a; tnfaip8l2-b
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Genomic context

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See tnfaip8l2.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (99701149..99727729)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (94670518..94698674)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene semaphorin 6C S homeolog Neighboring gene uncharacterized LOC121397578 Neighboring gene LysM, putative peptidoglycan-binding, domain containing 1 S homeolog Neighboring gene tropomodulin 4 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130915

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within innate immune response IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TNF alpha induced protein 8 like 2 S homeolog; tumor necrosis factor alpha-induced protein 8-like protein 2
Names
tumor necrosis factor, alpha-induced protein 8-like 2
tumor necrosis factor, alpha-induced protein 8-like protein 2 b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    99701149..99727729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018232123.2 → XP_018087612.1  tumor necrosis factor alpha-induced protein 8-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1L8F4R6, A0A974H6C6

  2. XM_041574509.1 → XP_041430443.1  tumor necrosis factor alpha-induced protein 8-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LLJ4
    Related
    ENSXLAP00005070513.1, ENSXLAT00005072053.1

  3. XM_018232125.2 → XP_018087614.1  tumor necrosis factor alpha-induced protein 8-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8J0TLG6
    Related
    ENSXLAP00005070447.1, ENSXLAT00005071987.1

  4. XM_018232126.2 → XP_018087615.1  tumor necrosis factor alpha-induced protein 8-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8J0TLG6

  5. XM_018232124.2 → XP_018087613.1  tumor necrosis factor alpha-induced protein 8-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8J0TLG6
    Related
    ENSXLAP00005070497.1, ENSXLAT00005072037.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001171733.1: Suppressed sequence

    Description
    NM_001171733.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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