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stoml3.L stomatin like 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734754, updated on 4-Nov-2024

Summary

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Official Symbol
stoml3.L
Official Full Name
stomatin like 3 L homeolog
Primary source
Xenbase:XB-GENE-1015877
Locus tag
XELAEV_18013692mg
See related
EnsemblRapid:ENSXLAG00005035427 AllianceGenome:Xenbase:XB-GENE-1015877
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
stoml3
Summary
Predicted to be located in plasma membrane. Orthologous to human STOML3 (stomatin like 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See stoml3.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (159616738..159638791)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (153732763..153739243)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene LHFPL tetraspan subfamily member 6 L homeolog Neighboring gene proline and serine rich 1 L homeolog Neighboring gene FRAS1 related extracellular matrix protein 2 L homeolog Neighboring gene involucrin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130889

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
stomatin like 3 L homeolog
Names
stomatin (EPB72)-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096223.1 → NP_001089692.1  stomatin like 3 L homeolog

    See identical proteins and their annotated locations for NP_001089692.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106347
    UniProtKB/TrEMBL
    A0A974DR67, Q3KQ81
    Related
    ENSXLAP00005105986.1, ENSXLAT00005108058.1
    Conserved Domains (1) summary
    cl19107
    Location:74 → 275
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    159616738..159638791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581115.1 → XP_041437049.1  stomatin like 3 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DR67, Q3KQ81
    Related
    ENSXLAP00005105968.1, ENSXLAT00005108039.1
    Conserved Domains (1) summary
    cl19107
    Location:74 → 275
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

  2. XM_041581116.1 → XP_041437050.1  stomatin like 3 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DR67, Q3KQ81
    Related
    ENSXLAP00005105917.1, ENSXLAT00005107988.1
    Conserved Domains (1) summary
    cl19107
    Location:74 → 275
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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