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pus7.L pseudouridine synthase 7 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734727, updated on 17-Aug-2024

Summary

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Official Symbol
pus7.L
Official Full Name
pseudouridine synthase 7 L homeolog
Primary source
Xenbase:XB-GENE-5812471
Locus tag
XELAEV_18017767mg
See related
EnsemblRapid:ENSXLAG00005035690
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pus7
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Genomic context

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Location:
chromosome: 3L
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (83345590..83372997, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (67995259..68022819, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene ataxin 7-like 1 L homeolog Neighboring gene EF-hand calcium binding domain 10 L homeolog Neighboring gene RAD50 interactor 1 L homeolog Neighboring gene SRSF protein kinase 2 Neighboring gene lysine (K)-specific methyltransferase 2E L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115581

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within tRNA processing IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pseudouridine synthase 7 L homeolog
Names
pseudouridylate synthase 7 (putative) L homeolog
pseudouridylate synthase 7 L homeolog
pseudouridylate synthase 7 homolog
NP_001089667.1
XP_018106734.1
XP_041441199.1
XP_041441200.1
XP_041441201.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096198.1 → NP_001089667.1  pseudouridine synthase 7 L homeolog

    See identical proteins and their annotated locations for NP_001089667.1

    Status: PROVISIONAL

    Source sequence(s)
    BC100242
    UniProtKB/TrEMBL
    A0A974HSX8, Q498E9
    Conserved Domains (1) summary
    cd02576
    Location:117 → 635
    PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    83345590..83372997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041585267.1 → XP_041441201.1  pseudouridine synthase 7 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1MIJ5, A0A974HSX8
    Related
    ENSXLAP00005106713.1, ENSXLAT00005108824.1
    Conserved Domains (1) summary
    cd02576
    Location:147 → 671
    PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family

  2. XM_018251245.2 → XP_018106734.1  pseudouridine synthase 7 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A1L8GZ75, A0A974HSX8, A0A974HT70
    Related
    ENSXLAP00005106731.1, ENSXLAT00005108842.1

  3. XM_041585266.1 → XP_041441200.1  pseudouridine synthase 7 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MJI5, A0A974HSX8
    Conserved Domains (1) summary
    cd02576
    Location:163 → 686
    PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family

  4. XM_041585265.1 → XP_041441199.1  pseudouridine synthase 7 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MHK1, A0A974HSX8
    Conserved Domains (1) summary
    cd02576
    Location:163 → 687
    PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family
Nucleotide Protein Strain
Heading Accession and Version

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