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snap29.S synaptosome associated protein 29kDa S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734683, updated on 4-Nov-2024

Summary

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Official Symbol
snap29.S
Official Full Name
synaptosome associated protein 29kDa S homeolog
Primary source
Xenbase:XB-GENE-17334060
Locus tag
XELAEV_18010522mg
See related
EnsemblRapid:ENSXLAG00005011755 AllianceGenome:Xenbase:XB-GENE-17334060
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to act upstream of or within cell projection organization; synaptic vesicle fusion to presynaptic active zone membrane; and synaptic vesicle priming. Predicted to be located in autophagosome membrane and ciliary membrane. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in CEDNIK syndrome. Orthologous to human SNAP29 (synaptosome associated protein 29). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See snap29.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (142431156..142438371, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (126673707..126681286, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 1 S homeolog Neighboring gene clathrin heavy chain like 1 S homeolog Neighboring gene phosphatidylinositol 4-kinase, catalytic, alpha S homeolog Neighboring gene serpin peptidase inhibitor, clade D (heparin cofactor), member 1 S homeolog Neighboring gene hypermethylated in cancer 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC116490

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within exocytosis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within synaptic vesicle fusion to presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within synaptic vesicle priming IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
  
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in ciliary membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC734683

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096154.1 → NP_001089623.1  uncharacterized protein LOC734683

    See identical proteins and their annotated locations for NP_001089623.1

    Status: PREDICTED

    Source sequence(s)
    BC099298
    UniProtKB/TrEMBL
    Q4KLC2
    Conserved Domains (2) summary
    cd15856
    Location:103 → 160
    SNARE_SNAP29C; C-terminal SNARE motif of SNAP29
    cl22856
    Location:1 → 18
    SNARE; SNARE motif

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    142431156..142438371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018239520.2 → XP_018095009.1  uncharacterized protein LOC734683 isoform X2

    UniProtKB/TrEMBL
    A0A1L8HQD7, A0A974DVZ7

  2. XM_018239516.2 → XP_018095005.2  uncharacterized protein LOC734683 isoform X1

    UniProtKB/TrEMBL
    A0A8J0U1Q0
    Conserved Domains (2) summary
    cd15856
    Location:209 → 266
    SNARE_SNAP29C; C-terminal SNARE motif of SNAP29
    cd15887
    Location:60 → 124
    SNARE_SNAP29N; N-terminal SNARE motif of SNAP29

  3. XM_018239528.2 → XP_018095017.1  uncharacterized protein LOC734683 isoform X2

    UniProtKB/TrEMBL
    A0A1L8HQD7, A0A974DVZ7
    Related
    ENSXLAP00005034303.1, ENSXLAT00005035186.1

  4. XM_018239523.2 → XP_018095012.1  uncharacterized protein LOC734683 isoform X2

    UniProtKB/TrEMBL
    A0A1L8HQD7, A0A974DVZ7
    Related
    ENSXLAP00005034306.1, ENSXLAT00005035189.1
Nucleotide Protein Strain
Heading Accession and Version

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