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cnpy2.L canopy FGF signaling regulator 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734679, updated on 4-Nov-2024

Summary

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Official Symbol
cnpy2.L
Official Full Name
canopy FGF signaling regulator 2 L homeolog
Primary source
Xenbase:XB-GENE-17333812
Locus tag
XELAEV_18013350mg
See related
EnsemblRapid:ENSXLAG00005007452 AllianceGenome:Xenbase:XB-GENE-17333812
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to be located in endoplasmic reticulum. Orthologous to human CNPY2 (canopy FGF signaling regulator 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cnpy2.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (144054338..144068211)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (138176979..138190856)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene inactive dipeptidyl peptidase 10 Neighboring gene SKI8 subunit of superkiller complex L homeolog Neighboring gene citrate synthase L homeolog Neighboring gene coenzyme Q10A L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC116481

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC734679

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096151.1 → NP_001089620.1  uncharacterized protein LOC734679 precursor

    See identical proteins and their annotated locations for NP_001089620.1

    Status: PREDICTED

    Source sequence(s)
    BC099289
    UniProtKB/TrEMBL
    Q4KLC8
    Conserved Domains (1) summary
    pfam11938
    Location:31 → 167
    DUF3456; TLR4 regulator and MIR-interacting MSAP

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    144054338..144068211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581110.1 → XP_041437044.1  uncharacterized protein LOC734679 isoform X3

    UniProtKB/TrEMBL
    A0A1L8HHT4, A0A974DPQ6
    Conserved Domains (1) summary
    pfam11938
    Location:31 → 167
    DUF3456; TLR4 regulator and MIR-interacting MSAP

  2. XM_018245322.2 → XP_018100811.1  uncharacterized protein LOC734679 isoform X2

    UniProtKB/TrEMBL
    A0A8J0U4C6
    Related
    ENSXLAP00005021221.1, ENSXLAT00005021888.1

  3. XM_041581109.1 → XP_041437043.1  uncharacterized protein LOC734679 isoform X1

    UniProtKB/TrEMBL
    A0A8J1M5U4
    Related
    ENSXLAP00005021214.1, ENSXLAT00005021881.1

  4. XM_018245323.2 → XP_018100812.1  uncharacterized protein LOC734679 isoform X3

    UniProtKB/TrEMBL
    A0A1L8HHT4, A0A974DPQ6
    Conserved Domains (1) summary
    pfam11938
    Location:31 → 167
    DUF3456; TLR4 regulator and MIR-interacting MSAP
Nucleotide Protein Strain
Heading Accession and Version

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