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prpf39.1.L pre-mRNA processing factor 39 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734636, updated on 17-Aug-2024

Summary

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Official Symbol
prpf39.1.L
Official Full Name
pre-mRNA processing factor 39 L homeolog
Primary source
Xenbase:XB-GENE-994641
Locus tag
XELAEV_18039608mg
See related
EnsemblRapid:ENSXLAG00005017793
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
prpf39; prpf39.1
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Genomic context

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Location:
chromosome: 8L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (83502995..83527972, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (68814205..68839800, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and fibronectin type III domain containing 5 L homeolog Neighboring gene TOG array regulator of axonemal microtubules 1 L homeolog Neighboring gene chromosome 8 C14orf28 homolog L homeolog Neighboring gene kelch like family member 28 L homeolog Neighboring gene FKBP prolyl isomerase 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115228

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pre-mRNA-processing factor 39
Names
PRP39 homolog
PRP39 pre-mRNA processing factor 39 homolog, gene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096111.1 → NP_001089580.1  pre-mRNA-processing factor 39

    See identical proteins and their annotated locations for NP_001089580.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098999
    UniProtKB/Swiss-Prot
    Q4KLU2
    UniProtKB/TrEMBL
    A0A974C7W9
    Conserved Domains (1) summary
    COG5107
    Location:63 → 368
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    83502995..83527972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572147.1 → XP_041428081.1  pre-mRNA-processing factor 39 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LF98, A0A974C7W9
    Related
    ENSXLAP00005052540.1, ENSXLAT00005053712.1
    Conserved Domains (1) summary
    COG5107
    Location:86 → 391
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  2. XM_041572148.1 → XP_041428082.1  pre-mRNA-processing factor 39 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LEV6
    Conserved Domains (1) summary
    COG5107
    Location:56 → 288
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  3. XM_041572149.1 → XP_041428083.1  pre-mRNA-processing factor 39 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LEV6
    Conserved Domains (1) summary
    COG5107
    Location:56 → 288
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4KLU2.1 GenPept UniProtKB/Swiss-Prot:Q4KLU2

Gene LinkOut

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