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pif1.L PIF1 5'-to-3' DNA helicase L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734585, updated on 4-Nov-2024

Summary

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Official Symbol
pif1.L
Official Full Name
PIF1 5'-to-3' DNA helicase L homeolog
Primary source
Xenbase:XB-GENE-5924693
Locus tag
XELAEV_18023037mg
See related
EnsemblRapid:ENSXLAG00005034928 AllianceGenome:Xenbase:XB-GENE-5924693
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pif1
Summary
Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and ATP hydrolysis activity. Predicted to act upstream of or within DNA metabolic process and mitochondrial genome maintenance. Predicted to be located in mitochondrion and nucleus. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pif1.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (83054272..83064947, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (77766152..77776828, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121403153 Neighboring gene ubiquitin specific peptidase 24 L homeolog Neighboring gene cilia and flagella associated protein 144 L homeolog Neighboring gene EBNA1 binding protein 2 L homeolog Neighboring gene cilia and flagella associated protein 57 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115521

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 5'-3' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA recombination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitochondrial genome maintenance IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within telomere maintenance IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP-dependent DNA helicase PIF1
Names
PIF1 5'-to-3' DNA helicase homolog
NP_001089530.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096061.1 → NP_001089530.1  ATP-dependent DNA helicase PIF1

    See identical proteins and their annotated locations for NP_001089530.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097805
    UniProtKB/Swiss-Prot
    Q0R4F1, Q4V7N6
    Related
    ENSXLAP00005104445.1, ENSXLAT00005106468.1
    Conserved Domains (2) summary
    pfam02689
    Location:551 → 598
    Herpes_Helicase; Helicase
    cl21455
    Location:207 → 504
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    83054272..83064947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0R4F1.1 GenPept UniProtKB/Swiss-Prot:Q0R4F1

Gene LinkOut

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