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spin1.L spindlin 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734556, updated on 4-Nov-2024

Summary

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Official Symbol
spin1.L
Official Full Name
spindlin 1 L homeolog
Primary source
Xenbase:XB-GENE-954621
Locus tag
XELAEV_18006983mg
See related
EnsemblRapid:ENSXLAG00005028837 AllianceGenome:Xenbase:XB-GENE-954621
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
spin1; spindlin
Summary
Predicted to act upstream of or within gamete generation. Predicted to be located in nucleus. Orthologous to human SPIN1 (spindlin 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See spin1.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (148660040..148681036, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (135779822..135800888, complement)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 14B like L homeolog Neighboring gene uncharacterized LOC108714819 Neighboring gene nucleoredoxin like 2 L homeolog Neighboring gene sphingosine-1-phosphate receptor 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115436

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within gamete generation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
spindlin 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096035.1 → NP_001089504.1  spindlin 1 L homeolog

    See identical proteins and their annotated locations for NP_001089504.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097748
    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Related
    ENSXLAP00005086003.1, ENSXLAT00005087663.1
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    148660040..148681036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018250110.2 → XP_018105599.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  2. XM_041582900.1 → XP_041438834.1  spindlin 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MAV3
    Related
    ENSXLAP00005086052.1, ENSXLAT00005087713.1
    Conserved Domains (1) summary
    pfam02513
    Location:15 → 63
    Spin-Ssty; Spin/Ssty Family

  3. XM_018250127.2 → XP_018105616.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  4. XM_041582899.1 → XP_041438833.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  5. XM_041582898.1 → XP_041438832.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  6. XM_018250152.2 → XP_018105641.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  7. XM_018250119.2 → XP_018105608.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  8. XM_018250136.2 → XP_018105625.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  9. XM_018250142.2 → XP_018105631.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  10. XM_041582897.1 → XP_041438831.1  spindlin 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DU20, Q4V7S2
    Conserved Domains (1) summary
    pfam02513
    Location:54 → 102
    Spin-Ssty; Spin/Ssty Family

  11. XM_018250167.2 → XP_018105656.1  spindlin 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MAV3
    Related
    ENSXLAP00005085974.1, ENSXLAT00005087636.1
    Conserved Domains (1) summary
    pfam02513
    Location:15 → 63
    Spin-Ssty; Spin/Ssty Family

  12. XM_041582901.1 → XP_041438835.1  spindlin 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MAV3
    Conserved Domains (1) summary
    pfam02513
    Location:15 → 63
    Spin-Ssty; Spin/Ssty Family
Nucleotide Protein Strain
Heading Accession and Version

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