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cyb561d2.S cytochrome b561 family member D2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734554, updated on 4-Nov-2024

Summary

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Official Symbol
cyb561d2.S
Official Full Name
cytochrome b561 family member D2 S homeolog
Primary source
Xenbase:XB-GENE-6255890
Locus tag
XELAEV_18025800mg
See related
EnsemblRapid:ENSXLAG00005017671 AllianceGenome:Xenbase:XB-GENE-6255890
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
101f6; tsp10; cyb561d2; cyb561d2.L
Summary
Predicted to enable heme binding activity and transmembrane monodehydroascorbate reductase activity. Predicted to be located in endoplasmic reticulum and membrane. Orthologous to human CYB561D2 (cytochrome b561 family member D2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cyb561d2.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (106975162..106980293, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (100557722..100562926, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene provisional ortholog of caveolin 3 S homeolog Neighboring gene transmembrane protein 115 S homeolog Neighboring gene NPR2 like, GATOR1 complex subunit S homeolog Neighboring gene testis expressed 264 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115430

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane monodehydroascorbate reductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cytochrome b561 family member D2 S homeolog
Names
cytochrome b-561 domain containing 2
cytochrome b561 family member D2 L homeolog
cytochrome b561 family, member D2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096033.1 → NP_001089502.1  cytochrome b561 family member D2 S homeolog

    See identical proteins and their annotated locations for NP_001089502.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097744
    UniProtKB/TrEMBL
    A0A974D1C0, Q4V7S6
    Related
    ENSXLAP00005052147.1, ENSXLAT00005053312.1
    Conserved Domains (1) summary
    cd08761
    Location:26 → 205
    Cyt_b561_CYB561D2_like; Eukaryotic cytochrome b(561), including the CYB561D2 gene product

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    106975162..106980293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259746.2 → XP_018115235.1  cytochrome b561 family member D2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GHF3, A0A974D1C0, A0A974D2Q2
    Conserved Domains (1) summary
    cd08761
    Location:26 → 205
    Cyt_b561_CYB561D2_like; Eukaryotic cytochrome b(561), including the CYB561D2 gene product

  2. XM_041591445.1 → XP_041447379.1  cytochrome b561 family member D2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GHF3, A0A974D1C0, A0A974D2Q2
    Conserved Domains (1) summary
    cd08761
    Location:26 → 205
    Cyt_b561_CYB561D2_like; Eukaryotic cytochrome b(561), including the CYB561D2 gene product
Nucleotide Protein Strain
Heading Accession and Version

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