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gpn3.L GPN-loop GTPase 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734520, updated on 4-Nov-2024

Summary

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Official Symbol
gpn3.L
Official Full Name
GPN-loop GTPase 3 L homeolog
Primary source
Xenbase:XB-GENE-973722
Locus tag
XELAEV_18007841mg
See related
EnsemblRapid:ENSXLAG00005027552 AllianceGenome:Xenbase:XB-GENE-973722
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
gpn3; atpbd1c
Summary
Predicted to enable GTP binding activity and GTPase activity. Orthologous to human GPN3 (GPN-loop GTPase 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See gpn3.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (176624781..176639779)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (163472835..163479415)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 L homeolog Neighboring gene anaphase promoting complex subunit 7 L homeolog Neighboring gene actin related protein 2/3 complex subunit 3 L homeolog Neighboring gene vacuolar protein sorting-associated protein 29 Neighboring gene RAD9 checkpoint clamp component B L homeolog Neighboring gene PTC7 protein phosphatase homolog L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
  2. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC114914

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
GPN-loop GTPase 3
Names
ATP-binding domain 1 family member C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096000.1 → NP_001089469.1  GPN-loop GTPase 3

    See identical proteins and their annotated locations for NP_001089469.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097651
    UniProtKB/Swiss-Prot
    Q4V7Z0
    UniProtKB/TrEMBL
    A0A974E3T0
    Related
    ENSXLAP00005081997.1, ENSXLAT00005083608.1
    Conserved Domains (2) summary
    COG1100
    Location:1 → 189
    Gem1; GTPase SAR1 family domain [General function prediction only]
    pfam03029
    Location:8 → 254
    ATP_bind_1; Conserved hypothetical ATP binding protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    176624781..176639779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041582859.1 → XP_041438793.1  GPN-loop GTPase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MB25
    Conserved Domains (1) summary
    cd17872
    Location:1 → 227
    GPN3; GPN-loop GTPase 3
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V7Z0.1 GenPept UniProtKB/Swiss-Prot:Q4V7Z0

Gene LinkOut

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