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tspan5.L tetraspanin 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734486, updated on 4-Nov-2024

Summary

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Official Symbol
tspan5.L
Official Full Name
tetraspanin 5 L homeolog
Primary source
Xenbase:XB-GENE-868322
Locus tag
XELAEV_18005752mg
See related
EnsemblRapid:ENSXLAG00005010629 AllianceGenome:Xenbase:XB-GENE-868322
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
net4; net-4; tm4sf9; tspan5; tspan-5; tspan5-a; tspan5-b
Summary
Predicted to be located in membrane. Is expressed in dermal system; endoderm; nervous system; and pharyngeal arch. Orthologous to human TSPAN5 (tetraspanin 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tspan5.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (79539793..79598124, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (68671695..68730130, complement)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene methionyl aminopeptidase 1 L homeolog Neighboring gene small Cajal body-specific RNA 15 Neighboring gene eukaryotic translation initiation factor 4E L homeolog Neighboring gene RAP1, GTP-GDP dissociation stimulator 1 L homeolog Neighboring gene sperm-tail PG-rich repeat-containing protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC99260

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tetraspanin 5 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095967.1 → NP_001089436.1  tetraspanin 5 L homeolog

    See identical proteins and their annotated locations for NP_001089436.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095918
    UniProtKB/TrEMBL
    A0A974DXX3, Q501Q6
    Related
    ENSXLAP00005031376.1, ENSXLAT00005032144.1
    Conserved Domains (2) summary
    cd03159
    Location:113 → 233
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:14 → 261
    Tetraspannin; Tetraspanin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    79539793..79598124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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