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trim62.S tripartite motif containing 62 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734482, updated on 17-Aug-2024

Summary

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Official Symbol
trim62.S
Official Full Name
tripartite motif containing 62 S homeolog
Primary source
Xenbase:XB-GENE-6256181
Locus tag
XELAEV_18030159mg
See related
EnsemblRapid:ENSXLAG00005005081
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
dear1; trim62; trim62.L
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Genomic context

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Location:
chromosome: 5S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (134505738..134537346, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (127799723..127831711, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene MGC86332 protein Neighboring gene regulator of calcineurin 2 S homeolog Neighboring gene chloride intracellular channel 5 S homeolog Neighboring gene runt-related transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115263

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tripartite motif containing 62 S homeolog
Names
tripartite motif containing 62 L homeolog
tripartite motif-containing 62

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095963.1 → NP_001089432.1  tripartite motif containing 62 S homeolog

    See identical proteins and their annotated locations for NP_001089432.1

    Status: PROVISIONAL

    Source sequence(s)
    BC094484
    UniProtKB/TrEMBL
    A0A974CTG8, Q505M2
    Related
    ENSXLAP00005015105.1, ENSXLAT00005015347.1
    Conserved Domains (6) summary
    smart00502
    Location:293 → 414
    BBC; B-Box C-terminal domain
    COG5222
    Location:141 → 258
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    cd13733
    Location:459 → 630
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
    pfam11717
    Location:37 → 93
    Tudor-knot; RNA binding activity-knot of a chromodomain
    cl00034
    Location:248 → 285
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:168 → 210
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    134505738..134537346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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